Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0085
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17997| Best HMM Match : No HMM Matches (HMM E-Value=.)              89   4e-18
SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_6749| Best HMM Match : RVT_1 (HMM E-Value=0.069)                    32   0.58 
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                30   2.3  
SB_21839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_14562| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  

>SB_17997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 89.0 bits (211), Expect = 4e-18
 Identities = 40/83 (48%), Positives = 50/83 (60%)
 Frame = +3

Query: 3   QFLDAMIDIESILRTNTFFGAADWIAKAENFARTPIESYSYSLNARNQITLWGPNGEITD 182
           + L+   D++S+L+TN  F    W+  A+    TP E   Y  NARNQITLWGP GEI D
Sbjct: 553 RLLEMFDDLDSLLQTNRNFLLGRWLNSAKALGTTPAEVALYEFNARNQITLWGPRGEIED 612

Query: 183 YACKQWAELFHYYYIPRWTKFLD 251
           YA K W+ L   YY PRW  F+D
Sbjct: 613 YANKMWSGLVKAYYKPRWELFID 635


>SB_52206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 28/83 (33%), Positives = 37/83 (44%)
 Frame = -3

Query: 417 AHFWYRSRARSIGLTAGRWIVSKVTNRNLYSTVDRIISRAVFSSKTSRFVLASREHPRTL 238
           AH     RA +I LT G W +  V        V+RIIS A +S  T  +  A  +  R L
Sbjct: 588 AHCVQDERASNIKLTMGEWRLFNVDGTEQVIPVERIISHANYSYNTVDYDYALLKLTRPL 647

Query: 237 SI*ECNNSGIAQPIVCMHNLLFP 169
                N +   QP VC+ +  FP
Sbjct: 648 -----NFTQYVQP-VCLPDSDFP 664


>SB_6749| Best HMM Match : RVT_1 (HMM E-Value=0.069)
          Length = 387

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 81  KAENFARTPIESYSYSLNARNQITLWGPNGEITDYACK 194
           KA+  A T +E YS  L   N I L GPN   T+  CK
Sbjct: 54  KAQLLADTNVELYSTDLPPENAIELVGPNYSTTNCDCK 91


>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1572

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/51 (29%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
 Frame = -1

Query: 320 WIESYPEQFSRRRLRVSFWHRG-NIQELCPS---RNVIIVE*LSPLFACII 180
           W+++Y  +FSR  +   F+ +G +I EL  +     V++ + ++P+FAC +
Sbjct: 820 WVKTYSLEFSRDGVFWEFYQQGASISELSGNDDRHTVVLHDLVTPIFACYV 870


>SB_21839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 454 NVLRQIIETRIKRPFLVQIQSKIYRVNRRSMDSVESHKQK 335
           NV+    E  +KR   V+ + K+  V +R  D+ E+ +Q+
Sbjct: 170 NVMENFFEREVKRLAFVEERKKMREVEKRERDAEETRRQQ 209


>SB_14562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 357 VSKVTNRNLYSTVDRIISRAVFSSKTSRFVLA 262
           + +VTN   Y TV R+  R   + K SRF +A
Sbjct: 36  IRRVTNSKQYRTVKRVYMRPDLAIKESRFFIA 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,188,570
Number of Sequences: 59808
Number of extensions: 580794
Number of successful extensions: 1255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)