Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0085
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family / ...    51   1e-06
At1g70060.1 68414.m08061 paired amphipathic helix repeat-contain...    30   1.9  
At2g46470.1 68415.m05783 OXA1 protein, putative similar to Oxa1 ...    28   7.8  
At2g32290.1 68415.m03947 beta-amylase, putative / 1,4-alpha-D-gl...    28   7.8  

>At5g13690.1 68418.m01594 alpha-N-acetylglucosaminidase family /
           NAGLU family contains Pfam profile: PF05089
           alpha-N-acetylglucosaminidase (NAGLU)
          Length = 806

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
 Frame = +3

Query: 3   QFLDAMIDIESILRTNTFFGAADWIAKAENFARTPIESYSYSLNARNQITLWGPNGEIT- 179
           +FL+ + D++ +L ++       W+  A+  A+   E   Y  NAR Q+T+W  + ++  
Sbjct: 662 KFLELIKDMDVLLASDDNCLLGTWLESAKKLAKNGDERKQYEWNARTQVTMWYDSNDVNQ 721

Query: 180 ----DYACKQWAELFHYYYIPR 233
               DYA K W+ L   YY+PR
Sbjct: 722 SKLHDYANKFWSGLLEDYYLPR 743


>At1g70060.1 68414.m08061 paired amphipathic helix repeat-containing
           protein similar to transcription co-repressor Sin3
           [Xenopus laevis] GI:4960210; contains Pfam profile
           PF02671: Paired amphipathic helix repeat
          Length = 1362

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 208 YSTIITFLDGQSSWMFPRCQNETRSLRRE 294
           Y+ ++T+L GQS W   +C   T+SL ++
Sbjct: 395 YNILLTYLFGQSLWSEGKCPQPTKSLDKD 423


>At2g46470.1 68415.m05783 OXA1 protein, putative similar to Oxa1
           protein [Arabidopsis thaliana] GI:10176922
          Length = 431

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
 Frame = +2

Query: 458 RPDPGKRTTLPDVDKESMRQ---KIPLPLLCGTPQRRSIXKRKR 580
           RPD  K   LPDV   S RQ     PLP     P+ +S+  +++
Sbjct: 348 RPDVRKLLNLPDVVNSSTRQPSPSSPLPFSFAEPKDQSVVAQEK 391


>At2g32290.1 68415.m03947 beta-amylase, putative /
           1,4-alpha-D-glucan maltohydrolase, putative similar to
           beta-amylase GI:13560977 from [Castanea crenata]
          Length = 577

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 414 HFWYRSRARSIGLTAGRWIVSKVTNRNLYSTVDRIISR 301
           H+WY++ + +  LTAG +    + NR+ Y  + +I+ R
Sbjct: 367 HWWYKTESHAAELTAGYY---NLKNRDGYRAIAKIMRR 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,593,932
Number of Sequences: 28952
Number of extensions: 399422
Number of successful extensions: 1005
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)