Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0084
         (858 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P98160 Cluster: Basement membrane-specific heparan sulf...    36   1.3  
UniRef50_A3N9X7 Cluster: Penicillin acylase-like protein; n=1; B...    33   7.0  

>UniRef50_P98160 Cluster: Basement membrane-specific heparan sulfate
            proteoglycan core protein precursor; n=26; Eumetazoa|Rep:
            Basement membrane-specific heparan sulfate proteoglycan
            core protein precursor - Homo sapiens (Human)
          Length = 4391

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 20/60 (33%), Positives = 32/60 (53%)
 Frame = +3

Query: 6    GSPRAARXAEPKXVRPGQSLTVECLVEGA*NSRRHLEIRQGNLLARVEIRGPVLVFNKHS 185
            G+P          V  GQ+L ++C+V G  +++     R GNL AR ++ GP+L  N+ S
Sbjct: 2825 GAPPIRIEPSSSRVAEGQTLDLKCVVPGQAHAQVTWHKRGGNLPARHQVHGPLLRLNQVS 2884


>UniRef50_A3N9X7 Cluster: Penicillin acylase-like protein; n=1;
           Burkholderia pseudomallei 668|Rep: Penicillin
           acylase-like protein - Burkholderia pseudomallei (strain
           668)
          Length = 774

 Score = 33.5 bits (73), Expect = 7.0
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +3

Query: 48  RPGQSLTVECLVEGA*NSRRHLEIRQGNLLARVEIRGPVLVFNKHSKWQACRHIL 212
           R G S+   C  +G   +RRH+ +    LLA  ++RG +L   K   W + RH L
Sbjct: 375 RLGPSVDAFCRHDGDREARRHVVLAWSGLLAAPDVRG-LLGVTKARDWSSFRHAL 428


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 680,127,259
Number of Sequences: 1657284
Number of extensions: 11086325
Number of successful extensions: 16494
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16465
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 75833093035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)