Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0084
(858 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane h... 36 0.19
M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteogly... 36 0.19
AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteog... 36 0.19
AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteog... 36 0.19
AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteog... 36 0.19
AB209851-1|BAD93088.1| 2331|Homo sapiens Basement membrane-speci... 36 0.19
Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for ... 31 4.1
X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for ... 31 4.1
M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen ... 31 4.1
BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein. 31 4.1
BC047305-1|AAH47305.1| 1075|Homo sapiens COL4A1 protein protein. 31 4.1
AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha ... 31 4.1
AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha ... 31 4.1
BC104946-1|AAI04947.1| 309|Homo sapiens ankyrin repeat and SOCS... 31 5.4
BC093883-1|AAH93883.1| 309|Homo sapiens ankyrin repeat and SOCS... 31 5.4
BC069555-1|AAH69555.1| 309|Homo sapiens ankyrin repeat and SOCS... 31 5.4
BC069436-1|AAH69436.1| 309|Homo sapiens ankyrin repeat and SOCS... 31 5.4
AL356317-1|CAI39932.1| 309|Homo sapiens ankyrin repeat and SOCS... 31 5.4
AK096896-1|BAC04888.1| 318|Homo sapiens protein ( Homo sapiens ... 31 5.4
AF403030-1|AAL57349.1| 308|Homo sapiens ankyrin repeat domain-c... 31 5.4
>X62515-1|CAA44373.1| 4393|Homo sapiens Human basement membrane
heparan sulfate proteoglycan core protein protein.
Length = 4393
Score = 35.9 bits (79), Expect = 0.19
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 6 GSPRAARXAEPKXVRPGQSLTVECLVEGA*NSRRHLEIRQGNLLARVEIRGPVLVFNKHS 185
G+P V GQ+L ++C+V G +++ R GNL AR ++ GP+L N+ S
Sbjct: 2827 GAPPIRIEPSSSRVAEGQTLDLKCVVPGQAHAQVTWHKRGGNLPARHQVHGPLLRLNQVS 2886
>M85289-1|AAA52700.1| 4391|Homo sapiens heparan sulfate proteoglycan
protein.
Length = 4391
Score = 35.9 bits (79), Expect = 0.19
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 6 GSPRAARXAEPKXVRPGQSLTVECLVEGA*NSRRHLEIRQGNLLARVEIRGPVLVFNKHS 185
G+P V GQ+L ++C+V G +++ R GNL AR ++ GP+L N+ S
Sbjct: 2825 GAPPIRIEPSSSRVAEGQTLDLKCVVPGQAHAQVTWHKRGGNLPARHQVHGPLLRLNQVS 2884
>AL590556-2|CAH71870.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 35.9 bits (79), Expect = 0.19
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 6 GSPRAARXAEPKXVRPGQSLTVECLVEGA*NSRRHLEIRQGNLLARVEIRGPVLVFNKHS 185
G+P V GQ+L ++C+V G +++ R GNL AR ++ GP+L N+ S
Sbjct: 2825 GAPPIRIEPSSSRVAEGQTLDLKCVVPGQAHAQVTWHKRGGNLPARHQVHGPLLRLNQVS 2884
>AL590103-2|CAI12125.1| 4391|Homo sapiens heparan sulfate proteoglycan
2 protein.
Length = 4391
Score = 35.9 bits (79), Expect = 0.19
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 6 GSPRAARXAEPKXVRPGQSLTVECLVEGA*NSRRHLEIRQGNLLARVEIRGPVLVFNKHS 185
G+P V GQ+L ++C+V G +++ R GNL AR ++ GP+L N+ S
Sbjct: 2825 GAPPIRIEPSSSRVAEGQTLDLKCVVPGQAHAQVTWHKRGGNLPARHQVHGPLLRLNQVS 2884
>AL445795-1|CAC18534.1| 4370|Homo sapiens heparan sulfate proteoglycan
perlecan protein.
Length = 4370
Score = 35.9 bits (79), Expect = 0.19
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 6 GSPRAARXAEPKXVRPGQSLTVECLVEGA*NSRRHLEIRQGNLLARVEIRGPVLVFNKHS 185
G+P V GQ+L ++C+V G +++ R GNL AR ++ GP+L N+ S
Sbjct: 2804 GAPPIRIEPSSSRVAEGQTLDLKCVVPGQAHAQVTWHKRGGNLPARHQVHGPLLRLNQVS 2863
>AB209851-1|BAD93088.1| 2331|Homo sapiens Basement membrane-specific
heparan sulfate proteoglycan core protein precursor
protein.
Length = 2331
Score = 35.9 bits (79), Expect = 0.19
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +3
Query: 6 GSPRAARXAEPKXVRPGQSLTVECLVEGA*NSRRHLEIRQGNLLARVEIRGPVLVFNKHS 185
G+P V GQ+L ++C+V G +++ R GNL AR ++ GP+L N+ S
Sbjct: 765 GAPPIRIEPSSSRVAEGQTLDLKCVVPGQAHAQVTWHKRGGNLPARHQVHGPLLRLNQVS 824
>Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for
alpha1 chain of basement membrane (type IV) collagen.in
neoplastic tissue). ).
Length = 1212
Score = 31.5 bits (68), Expect = 4.1
Identities = 38/133 (28%), Positives = 44/133 (33%), Gaps = 4/133 (3%)
Frame = +3
Query: 459 GVPRNNXKLVNPGVXLXPVSGRVGXXXPGLGXKKXXRXPKEVXRXRXGXVNYXGLXIPG* 638
G P + PGV G +G PGL + P + G G+ PG
Sbjct: 707 GTPGEKGSIGVPGVP--GEHGAIGP--PGLQGIRGEPGPPGLP-GSVGSPGVPGIGPPGA 761
Query: 639 XGIPQFXGQXXLSRXTGXD----FXGFLGREXGXPKGVSWGQNRPVXXXPPGXKPXXETL 806
G P G LS G F GF G + PKG Q P G
Sbjct: 762 RGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQ 821
Query: 807 GPPFXPQFKLSKG 845
G P P F SKG
Sbjct: 822 GAPGIPGFPGSKG 834
>X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for
alpha-1 chain of collagen IV N-terminus. ).
Length = 944
Score = 31.5 bits (68), Expect = 4.1
Identities = 38/133 (28%), Positives = 44/133 (33%), Gaps = 4/133 (3%)
Frame = +3
Query: 459 GVPRNNXKLVNPGVXLXPVSGRVGXXXPGLGXKKXXRXPKEVXRXRXGXVNYXGLXIPG* 638
G P + PGV G +G PGL + P + G G+ PG
Sbjct: 752 GTPGEKGSIGVPGVP--GEHGAIGP--PGLQGIRGEPGPPGLP-GSVGSPGVPGIGPPGA 806
Query: 639 XGIPQFXGQXXLSRXTGXD----FXGFLGREXGXPKGVSWGQNRPVXXXPPGXKPXXETL 806
G P G LS G F GF G + PKG Q P G
Sbjct: 807 RGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQ 866
Query: 807 GPPFXPQFKLSKG 845
G P P F SKG
Sbjct: 867 GAPGIPGFPGSKG 879
>M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen
protein.
Length = 1669
Score = 31.5 bits (68), Expect = 4.1
Identities = 38/133 (28%), Positives = 44/133 (33%), Gaps = 4/133 (3%)
Frame = +3
Query: 459 GVPRNNXKLVNPGVXLXPVSGRVGXXXPGLGXKKXXRXPKEVXRXRXGXVNYXGLXIPG* 638
G P + PGV G +G PGL + P + G G+ PG
Sbjct: 752 GTPGEKGSIGVPGVP--GEHGAIGP--PGLQGIRGEPGPPGLP-GSVGSPGVPGIGPPGA 806
Query: 639 XGIPQFXGQXXLSRXTGXD----FXGFLGREXGXPKGVSWGQNRPVXXXPPGXKPXXETL 806
G P G LS G F GF G + PKG Q P G
Sbjct: 807 RGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQ 866
Query: 807 GPPFXPQFKLSKG 845
G P P F SKG
Sbjct: 867 GAPGIPGFPGSKG 879
>BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.
Length = 1669
Score = 31.5 bits (68), Expect = 4.1
Identities = 38/133 (28%), Positives = 44/133 (33%), Gaps = 4/133 (3%)
Frame = +3
Query: 459 GVPRNNXKLVNPGVXLXPVSGRVGXXXPGLGXKKXXRXPKEVXRXRXGXVNYXGLXIPG* 638
G P + PGV G +G PGL + P + G G+ PG
Sbjct: 752 GTPGEKGSIGVPGVP--GEHGAIGP--PGLQGIRGEPGPPGLP-GSVGSPGVPGIGPPGA 806
Query: 639 XGIPQFXGQXXLSRXTGXD----FXGFLGREXGXPKGVSWGQNRPVXXXPPGXKPXXETL 806
G P G LS G F GF G + PKG Q P G
Sbjct: 807 RGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQ 866
Query: 807 GPPFXPQFKLSKG 845
G P P F SKG
Sbjct: 867 GAPGIPGFPGSKG 879
>BC047305-1|AAH47305.1| 1075|Homo sapiens COL4A1 protein protein.
Length = 1075
Score = 31.5 bits (68), Expect = 4.1
Identities = 38/133 (28%), Positives = 44/133 (33%), Gaps = 4/133 (3%)
Frame = +3
Query: 459 GVPRNNXKLVNPGVXLXPVSGRVGXXXPGLGXKKXXRXPKEVXRXRXGXVNYXGLXIPG* 638
G P + PGV G +G PGL + P + G G+ PG
Sbjct: 158 GTPGEKGSIGVPGVP--GEHGAIGP--PGLQGIRGEPGPPGLP-GSVGSPGVPGIGPPGA 212
Query: 639 XGIPQFXGQXXLSRXTGXD----FXGFLGREXGXPKGVSWGQNRPVXXXPPGXKPXXETL 806
G P G LS G F GF G + PKG Q P G
Sbjct: 213 RGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQ 272
Query: 807 GPPFXPQFKLSKG 845
G P P F SKG
Sbjct: 273 GAPGIPGFPGSKG 285
>AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 31.5 bits (68), Expect = 4.1
Identities = 38/133 (28%), Positives = 44/133 (33%), Gaps = 4/133 (3%)
Frame = +3
Query: 459 GVPRNNXKLVNPGVXLXPVSGRVGXXXPGLGXKKXXRXPKEVXRXRXGXVNYXGLXIPG* 638
G P + PGV G +G PGL + P + G G+ PG
Sbjct: 752 GTPGEKGSIGVPGVP--GEHGAIGP--PGLQGIRGEPGPPGLP-GSVGSPGVPGIGPPGA 806
Query: 639 XGIPQFXGQXXLSRXTGXD----FXGFLGREXGXPKGVSWGQNRPVXXXPPGXKPXXETL 806
G P G LS G F GF G + PKG Q P G
Sbjct: 807 RGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQ 866
Query: 807 GPPFXPQFKLSKG 845
G P P F SKG
Sbjct: 867 GAPGIPGFPGSKG 879
>AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 31.5 bits (68), Expect = 4.1
Identities = 38/133 (28%), Positives = 44/133 (33%), Gaps = 4/133 (3%)
Frame = +3
Query: 459 GVPRNNXKLVNPGVXLXPVSGRVGXXXPGLGXKKXXRXPKEVXRXRXGXVNYXGLXIPG* 638
G P + PGV G +G PGL + P + G G+ PG
Sbjct: 752 GTPGEKGSIGVPGVP--GEHGAIGP--PGLQGIRGEPGPPGLP-GSVGSPGVPGIGPPGA 806
Query: 639 XGIPQFXGQXXLSRXTGXD----FXGFLGREXGXPKGVSWGQNRPVXXXPPGXKPXXETL 806
G P G LS G F GF G + PKG Q P G
Sbjct: 807 RGPPGGQGPPGLSGPPGIKGEKGFPGFPGLDMPGPKGDKGAQGLPGITGQSGLPGLPGQQ 866
Query: 807 GPPFXPQFKLSKG 845
G P P F SKG
Sbjct: 867 GAPGIPGFPGSKG 879
>BC104946-1|AAI04947.1| 309|Homo sapiens ankyrin repeat and SOCS
box-containing protein 12 protein.
Length = 309
Score = 31.1 bits (67), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 224 RSALTATRITAQPAQCACVQPEXTXQRDIPXLRLVYXRXQ 343
RS L+ R+ + A C QP+ Q DIP + + Y + Q
Sbjct: 269 RSLLSQVRLVVRRALCQAGQPQAINQLDIPPMLISYLKHQ 308
>BC093883-1|AAH93883.1| 309|Homo sapiens ankyrin repeat and SOCS
box-containing 12 protein.
Length = 309
Score = 31.1 bits (67), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 224 RSALTATRITAQPAQCACVQPEXTXQRDIPXLRLVYXRXQ 343
RS L+ R+ + A C QP+ Q DIP + + Y + Q
Sbjct: 269 RSLLSQVRLVVRRALCQAGQPQAINQLDIPPMLISYLKHQ 308
>BC069555-1|AAH69555.1| 309|Homo sapiens ankyrin repeat and SOCS
box-containing 12 protein.
Length = 309
Score = 31.1 bits (67), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 224 RSALTATRITAQPAQCACVQPEXTXQRDIPXLRLVYXRXQ 343
RS L+ R+ + A C QP+ Q DIP + + Y + Q
Sbjct: 269 RSLLSQVRLVVRRALCQAGQPQAINQLDIPPMLISYLKHQ 308
>BC069436-1|AAH69436.1| 309|Homo sapiens ankyrin repeat and SOCS
box-containing 12 protein.
Length = 309
Score = 31.1 bits (67), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 224 RSALTATRITAQPAQCACVQPEXTXQRDIPXLRLVYXRXQ 343
RS L+ R+ + A C QP+ Q DIP + + Y + Q
Sbjct: 269 RSLLSQVRLVVRRALCQAGQPQAINQLDIPPMLISYLKHQ 308
>AL356317-1|CAI39932.1| 309|Homo sapiens ankyrin repeat and SOCS
box-containing 12 protein.
Length = 309
Score = 31.1 bits (67), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 224 RSALTATRITAQPAQCACVQPEXTXQRDIPXLRLVYXRXQ 343
RS L+ R+ + A C QP+ Q DIP + + Y + Q
Sbjct: 269 RSLLSQVRLVVRRALCQAGQPQAINQLDIPPMLISYLKHQ 308
>AK096896-1|BAC04888.1| 318|Homo sapiens protein ( Homo sapiens
cDNA FLJ39577 fis, clone SKMUS2002920, weakly similar to
Homo sapiens ASB-1 protein mRNA. ).
Length = 318
Score = 31.1 bits (67), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 224 RSALTATRITAQPAQCACVQPEXTXQRDIPXLRLVYXRXQ 343
RS L+ R+ + A C QP+ Q DIP + + Y + Q
Sbjct: 278 RSLLSQVRLVVRRALCQAGQPQAINQLDIPPMLISYLKHQ 317
>AF403030-1|AAL57349.1| 308|Homo sapiens ankyrin repeat
domain-containing SOCS box protein Asb-12 protein.
Length = 308
Score = 31.1 bits (67), Expect = 5.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +2
Query: 224 RSALTATRITAQPAQCACVQPEXTXQRDIPXLRLVYXRXQ 343
RS L+ R+ + A C QP+ Q DIP + + Y + Q
Sbjct: 269 RSLLSQVRLVVRRALCQAGQPQAINQLDIPPMLISYLKHQ 308
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,495,096
Number of Sequences: 237096
Number of extensions: 2003863
Number of successful extensions: 5482
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5467
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10928473528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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