Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0083
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 40 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 38 0.002
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 36 0.004
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 36 0.004
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 36 0.005
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 34 0.020
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 34 0.020
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 33 0.027
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.027
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 33 0.036
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.036
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 33 0.047
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 31 0.14
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.19
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 31 0.19
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 30 0.33
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 30 0.33
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 30 0.33
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.3
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 27 1.8
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 2.3
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2... 27 2.3
SPAC823.07 |||GPI-phospholipase A2 activity regulator |Schizosac... 27 2.3
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 2.3
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 26 4.1
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 5.4
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 5.4
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy... 25 7.2
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 7.2
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 25 9.5
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
G AFV F + D ++A++T++G+ LD RE+ VQ AR
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKAR 125
Score = 31.5 bits (68), Expect = 0.11
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +2
Query: 242 RSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
R R RGF FV F D A++ M+G+ + L V+ A
Sbjct: 251 RGEQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSA 293
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +3
Query: 132 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
D +L+V NL+ T E+LR +F R G + +Y+ +D+ TG+ +
Sbjct: 199 DDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
Score = 29.9 bits (64), Expect = 0.33
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +2
Query: 197 RFRKVRRSW*YLHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RF ++R YL + R ++GFAFV +++R A +A D +DG + LR + ++
Sbjct: 224 RFGGIQRV--YLAKDKETGR-AKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSK 279
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 36.3 bits (80), Expect = 0.004
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
S+ V N+ Y TPE+L+ F CG V + I D++TG
Sbjct: 56 SVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTG 93
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 36.3 bits (80), Expect = 0.004
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVEDSPS*GFSSVVMLKK 311
V NL++ T +DL F CG++ I +P D +G+++ FS + KK
Sbjct: 370 VGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKK 422
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.9 bits (79), Expect = 0.005
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRG+ FVRF + D + AL M G++ R +RV +A
Sbjct: 227 SRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLA 263
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.9 bits (74), Expect = 0.020
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
GFAFV +R+ AEEA+++++G +D R + V A
Sbjct: 149 GFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWA 183
Score = 29.1 bits (62), Expect = 0.58
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
E+RG+ FV F DA+ A + + L R LR+ A
Sbjct: 44 ENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFA 81
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 33.9 bits (74), Expect = 0.020
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 254
V NL++ TT E + +F +CGE+ I + DR+T
Sbjct: 36 VGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFT 69
Score = 30.3 bits (65), Expect = 0.25
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELRVQM 367
GF FV +FE +DA ++L + LD R +R +
Sbjct: 74 GFCFVEYFENQDALDSLKYISRTSLDERIIRADL 107
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 33.5 bits (73), Expect = 0.027
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +2
Query: 227 YLHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
++H QR S+GF ++++ A AL+ M+G L R +RV
Sbjct: 368 FVHLQRDDQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRV 412
Score = 29.5 bits (63), Expect = 0.44
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 245
L V N+ + T ED++ +FE G++ +++ RD
Sbjct: 342 LCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD 374
Score = 28.7 bits (61), Expect = 0.77
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L R T +L FE+ G V D I RD+ +G+
Sbjct: 244 VSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 33.5 bits (73), Expect = 0.027
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
S GF FV F ++ A A+ M+G +LD +L ++++ G
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQG 703
Score = 29.1 bits (62), Expect = 0.58
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
R +RGFAF F R+A A+ + L R L +Q A
Sbjct: 758 RSARGFAFAEFVTAREAANAMRALKNTHLLGRHLVLQYA 796
Score = 28.7 bits (61), Expect = 0.77
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +3
Query: 159 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 254
NLTY +DL+ +F G++ +++P D+ T
Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKT 360
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 33.1 bits (72), Expect = 0.036
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 245 SVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+V R S G+A+V F D E+ALD ++ ++ R R+ ++
Sbjct: 115 AVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQ 157
Score = 29.1 bits (62), Expect = 0.58
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+S+GF FV + +A +A+ M+ RML + L V +A+
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 33.1 bits (72), Expect = 0.036
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 117 PPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
P R DG + + L + TT + LR FE+ GEV D + RD TG+
Sbjct: 157 PFNREDG--KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGR 202
>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 275
Score = 32.7 bits (71), Expect = 0.047
Identities = 19/42 (45%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLD--XRELRVQMAR 373
R SR FAFV + + RDAE+A + GR L+ LRV+ A+
Sbjct: 44 RTSRPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAK 85
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SR + FVRF ++ + AL M G + R LR+ +A
Sbjct: 223 SRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVA 259
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 30.7 bits (66), Expect = 0.19
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 132 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
D V L V NL ++ E L+ F+R G+V + IP D+ +G+
Sbjct: 89 DRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGR 131
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 30.7 bits (66), Expect = 0.19
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
V + SRGF F+ F +A A+D ++ + R L VQ A+
Sbjct: 137 VTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAK 178
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
S+GF F F DAE A+ +DG+ +L Q A G
Sbjct: 350 SKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFACVG 389
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
+ NL + +D+ VF GE DI + RD+ TGK
Sbjct: 35 IGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGK 70
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
+S+GFAF+++ ++R A+D M L R +RV
Sbjct: 70 KSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRV 104
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 29.9 bits (64), Expect = 0.33
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +3
Query: 132 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
D ++ + L+Y T D+ R F R G + I + R++ TGK
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGK 139
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -1
Query: 162 DYLLLTRPCHRFVAEVFRNSF*IV*IFSSNQTNLII 55
D++ +T P H FV + RNS + + S+N +N+I+
Sbjct: 145 DFMNITDPTHGFVQYLDRNSSAKLGLISANSSNVIM 180
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
V N++ T E LR F+ GEV D+ + + YTG
Sbjct: 98 VSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTG 132
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+G+ FV F + A A DT++G M+ + + V A
Sbjct: 424 SKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFA 460
>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
Mei2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 750
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 284 FFERRDAEEALDTMDGRML 340
F++ RDA ALD +DGR++
Sbjct: 336 FYDTRDASFALDELDGRII 354
>SPAC823.07 |||GPI-phospholipase A2 activity regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 3/17 (17%)
Frame = -2
Query: 488 DCGNGCGYDC---ASNY 447
DCG+ CGY+C A NY
Sbjct: 65 DCGSNCGYECEITAENY 81
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+GFA+++F + ++AL + +M + R LR+ A+
Sbjct: 311 KGFAYIQFKDTMGVDKALLLNEKKMPEGRTLRIMRAK 347
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 479 NGCGYDCASNYDGGNETWTCACD 411
+GC + Y+GG +TW C+ D
Sbjct: 89 DGCNDLVPNVYEGGYKTWECSLD 111
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L V NL + TT DL+ F + G++ + + TGK
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGK 267
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 174 TTPEDLRRVFERCGEVGDIYIPRDRYTG 257
T EDL +F R G++ + RD+ TG
Sbjct: 255 TQDEDLELIFSRFGKIISCQVIRDKETG 282
>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 370
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -1
Query: 264 LLSLCTDLWECRYHQLLRTFRKRGVSLQAS 175
L+ C +W+C+ Q + F +RG+ + S
Sbjct: 228 LILACDGIWDCKSSQQVVEFVRRGIVARQS 257
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLD-XRELRVQM 367
S+G A + F DA A + +GR++D R+++V++
Sbjct: 95 SKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = -1
Query: 258 SLCTDLWECRYHQLLRTFRKRGVSLQASFGR*DYLLLTRPCHRFVAEVF 112
+L D W+ L R + G+ L +GR D L +R ++E F
Sbjct: 202 ALSPDQWQQAIENLYRLLKPGGLILFRDYGRLDLTQLRAKKNRILSENF 250
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,293,685
Number of Sequences: 5004
Number of extensions: 43100
Number of successful extensions: 161
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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