Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0083
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 3e-19
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 6e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 38 0.005
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 38 0.007
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 38 0.009
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 38 0.009
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 37 0.016
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 36 0.029
SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.087
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 33 0.20
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 33 0.20
SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017) 33 0.27
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.27
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 33 0.27
SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0) 33 0.27
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.35
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.62
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 31 1.1
SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 31 1.1
SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 30 1.9
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 30 1.9
SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05) 29 2.5
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 29 3.3
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 29 3.3
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 29 3.3
SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 29 3.3
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3) 29 4.3
SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 28 5.7
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 28 5.7
SB_46137| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.6
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 92.3 bits (219), Expect = 3e-19
Identities = 47/91 (51%), Positives = 55/91 (60%)
Frame = +3
Query: 114 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVEDSPS*GFSS 293
R PP IDGM SLKVDNLTYRTT EDL++VF++ G++GDIYIPRDR T + F
Sbjct: 7 RGPPEIDGMTSLKVDNLTYRTTVEDLKQVFKKYGDLGDIYIPRDRNTHESRGFAFVRFYE 66
Query: 294 VVMLKKPWTRWTDECWTAGSFAFRWRDMVAP 386
+ C A F FRWRDMV P
Sbjct: 67 KRDAEDAMDCMDATCLMAEKFVFRWRDMVVP 97
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
V R GFAF F +RRDAE+A+ +DGR + + +RV++A+
Sbjct: 63 VARNPPGFAFCIFDDRRDAEDAVRELDGRYICGQRVRVELAK 104
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +2
Query: 236 SQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S R R RGFAFV F +++ E+A++ +DG+ D R ++V AR
Sbjct: 262 SDRETQRP-RGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVNQAR 306
Score = 34.7 bits (76), Expect = 0.066
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RGF FV F + ++A+D DG LD R ++V A+
Sbjct: 50 RGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVNKAQ 86
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
V R GFAF F +RRDAE+A+ +DGR + + RV++A+
Sbjct: 33 VARNPPGFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAK 74
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQ 364
SRGFA+V + + + E+AL MDG +D +E+ VQ
Sbjct: 1197 SRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQ 1231
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RGF FV F + + E+A+D DG+ LD R ++V A+
Sbjct: 137 RGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVNEAK 173
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
V R GFAFV + + RDAEEA+ +DG + R +RV+ +
Sbjct: 35 VARNPPGFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFS 75
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARY 376
+S+GFAF+ F R DA A++ + G D L V+ A+Y
Sbjct: 220 QSKGFAFINFVHREDAARAIEVLSGFGYDHLILNVEWAKY 259
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RGF FV F + + E+A+D DG+ D R ++V A+
Sbjct: 45 RGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVNQAQ 81
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 35.9 bits (79), Expect = 0.029
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 269 FAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
FAFV F + RDAE+A+ DG D +RV+ R G
Sbjct: 302 FAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEFPRGG 338
>SB_2543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 34.3 bits (75), Expect = 0.087
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 254
V NL Y T DL +VFER G+V + I RD+ T
Sbjct: 14 VGNLPYSLTNSDLHKVFERYGKVVKVTILRDKET 47
Score = 32.7 bits (71), Expect = 0.27
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RESRG AF+ F +R+ A+ A+ ++ + + R ++ +A+
Sbjct: 48 RESRGVAFILFIDRQSAQNAVAAVNKKQMFGRTIKCTIAK 87
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +3
Query: 132 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
D S+ + NL + E LR +F CG V + + RDR TG
Sbjct: 53 DHQRSVFIGNLPFDIEEEPLRELFTTCGNVESVRLIRDRKTG 94
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RG+ FV F + RDAE+A+ ++GR L + V+ ++
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSK 758
>SB_57661| Best HMM Match : RRM_1 (HMM E-Value=0.017)
Length = 255
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +3
Query: 111 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVED 269
G R V L V + +DLR +FE G++ ++ I +D+YTG+ +D
Sbjct: 160 GTTSVRDSNSVKLFVGQVPRTWEEKDLRPIFEPYGQIYELTILKDKYTGQHKD 212
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 32.7 bits (71), Expect = 0.27
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
ESRGF FV + + A++ L M G +D R++R+ A
Sbjct: 325 ESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFA 362
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 132 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
D + L V L+Y TT E L+ F + GE+ + I D TG+
Sbjct: 26 DDIGKLFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGR 68
>SB_50249| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 420
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
+L VDNL+ T D+ R F G+V ++I DR TGK
Sbjct: 320 TLFVDNLSEDTKELDVLRYFRPYGQVAKVHILTDRETGK 358
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDI 230
L V +L + TT ++LR FE+CGE+ I
Sbjct: 238 LMVQDLDFDTTVDELREYFEKCGELTGI 265
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 32.3 bits (70), Expect = 0.35
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
SRGF FV F DA+ A+ +++G+ + R L++
Sbjct: 98 SRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKI 131
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+S G+AFV + DA +A+ M+G L + L+V AR
Sbjct: 66 QSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFAR 104
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +2
Query: 242 RSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
+ V E RG FVRF +R +A+ A+D ++ + L +++
Sbjct: 146 KDVSGEGRGTGFVRFDKRCEAQTAIDDLNNKTLPGTNVKL 185
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RG+AF+ + RD A DG+ +D R + V + R
Sbjct: 47 RGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVDVER 83
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXREL 355
+S+GF FV F +AEEA++ ++G+ + R L
Sbjct: 147 KSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S+GF FV F +A +A+ M+GR+L + L V +A+
Sbjct: 251 SKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQ 288
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 31.5 bits (68), Expect = 0.62
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+S+GF FV F R DA +A+ MD + ++++ A
Sbjct: 552 KSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWA 589
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDT---MDGRMLDXR 349
R SRGF FVRF + DA+ L T + GR+ + R
Sbjct: 153 RRSRGFGFVRFKKDEDAKNVLSTSHRIQGRLCEVR 187
Score = 31.1 bits (67), Expect = 0.81
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 114 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 242
RP ++ L V L TT + L F + GEV D+YIP+
Sbjct: 190 RPKEELNVPKKLFVGRLPESTTEKTLMEYFAQFGEVTDVYIPK 232
>SB_33676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 828
Score = 31.1 bits (67), Expect = 0.81
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
S GF FV + DA++A+D ++G + + L+V +R G
Sbjct: 87 SYGFGFVDYNTTEDAQKAIDKLNGFTIGNKVLKVAFSRPG 126
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RGF FV F D A+D M+ L R +RV +A+
Sbjct: 46 RGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAK 82
>SB_43406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 233 HSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
H +R ++R FV F A++A+D M+G + +RV MAR
Sbjct: 133 HVERVNFEKNRSQGFVTFDTWEAADKAIDEMNGLKVQHVHIRVSMAR 179
>SB_31414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 610
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
++ + +AFV F ER A +A++ DG+ +D ++ +A+
Sbjct: 359 KKLKDYAFVHFTERDHALKAIEETDGKEMDGLKIEASLAK 398
>SB_52029| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 462
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
++S+G V+F +A A++ + G+ML R LRV+M R
Sbjct: 222 KKSKGMGTVQFETPMEAMNAVNLLHGKMLMDRALRVRMDR 261
>SB_42066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 141 VSLKVDNLTYR--TTPEDLRRVFERCGEVGDI-YIPRDR 248
+S+K +N R T E+L +FE CG+V D ++P+DR
Sbjct: 147 LSVKYNNDKTRESVTEEELTSMFEDCGDVADFRFLPKDR 185
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
S+G+ FV+F E A+ A++ M+G L R L++
Sbjct: 282 SKGYGFVQFREAEAAKRAMEQMNGFELAGRPLKI 315
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 482 GNGCGYDCASNYDGGNETWTCACDRNDSCMAMRG 381
GN C C + G N C C N +C A+ G
Sbjct: 652 GNACDRPCPAGKHGANCGLKCLCANNGTCNAITG 685
>SB_1040| Best HMM Match : RRM_1 (HMM E-Value=1e-05)
Length = 282
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +2
Query: 251 HRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
H++ +G + F ++D ++AL +DG+ L + +R+
Sbjct: 199 HKQKQGEGVIEFATKKDLKKALRKLDGKELKGKRIRL 235
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +2
Query: 251 HRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
H++ +G + F +RD + AL +DG L+ + +R+
Sbjct: 129 HKQRQGEGVIEFSCKRDLKRALKKLDGEELNGKRIRL 165
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+GFAF+ F ++ A++ M+G+ L R + V A
Sbjct: 141 SKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPR 242
+L V N+ TT DL+ FER GEV D+ I +
Sbjct: 250 TLFVGNIEKTTTYGDLKEAFERYGEVIDVDIKK 282
>SB_14150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 429
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = -2
Query: 482 GN-GCGYDCASNYDGGNETWTCACDRNDSC 396
GN GCGY C NY GN CD N C
Sbjct: 171 GNYGCGYGCDGNYGCGN-----GCDGNYGC 195
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
SRGFAFV + +AE+ +GR ++ +RV
Sbjct: 246 SRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRV 279
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 239 QRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+R SRGF FV + D E+ DG + R L+V A
Sbjct: 75 EREQPERSRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKVAEA 118
>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
Length = 1259
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = -2
Query: 314 GLLQHHDARKTLRRRILYFPCVPISGNVDITNFSAPFENAA 192
G L+ H T RRILY VP+ GN IT P++ AA
Sbjct: 137 GFLRFHVYFTT--RRILYELGVPLPGNSPITQKGNPYKKAA 175
>SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -2
Query: 341 PTFVRPSCP--GLLQHHDARKTLRRRILYFPCVPISGNVDITNFSAPFENAA 192
PTF P G L+ H T RRILY VP+ G+ T P++ AA
Sbjct: 142 PTFATPPSVIRGFLRFHVYDTT--RRILYELGVPLPGDSPFTQKGNPYKKAA 191
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 28.3 bits (60), Expect = 5.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 171 RTTPEDLRRVFERCGEVGDIYIPRDRYT 254
R ED+R FE+ G + D+++ +D+ T
Sbjct: 33 RHNAEDIRSAFEQYGTIEDVWVVKDKAT 60
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
++ + +GFAFV + A+ AL+ M+G +L R ++V
Sbjct: 138 LNMKHKGFAFVEYDLPEAAQLALEQMNGVLLGGRNIKV 175
>SB_46137| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 646
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -3
Query: 364 LNAKLPAVQHSSVHRVQGFFSITTLEKPYEGESSTFPVYRSLGM 233
L KL +QH++V + + + L+ P + + + RSLGM
Sbjct: 74 LKIKLEGLQHNAVKAIVDYLYTSCLDVPADSVLNVYLAARSLGM 117
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,573,029
Number of Sequences: 59808
Number of extensions: 332494
Number of successful extensions: 949
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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