Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0083
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 74 1e-13
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 74 1e-13
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 40 0.002
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 40 0.002
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 38 0.005
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 38 0.005
U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein (sp... 37 0.011
U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein (sp... 37 0.011
U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein (spl... 37 0.011
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 37 0.014
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 36 0.025
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 36 0.025
U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein (sp... 36 0.025
U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein (spl... 36 0.025
U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein (spl... 36 0.025
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 36 0.033
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 35 0.044
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 35 0.044
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 35 0.058
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 35 0.058
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 35 0.058
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 35 0.058
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 35 0.058
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 35 0.058
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 34 0.10
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 34 0.10
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 34 0.10
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 33 0.18
Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical pr... 33 0.23
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 33 0.23
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 33 0.23
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 33 0.23
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 32 0.41
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 31 0.54
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 31 0.54
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 31 0.54
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 0.71
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 0.71
U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna b... 31 0.71
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.71
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 30 1.6
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 29 2.2
Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical p... 29 2.9
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 29 2.9
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily a... 29 2.9
AC006696-7|AAF39988.1| 140|Caenorhabditis elegans Hypothetical ... 29 2.9
AC006696-6|AAF39986.1| 141|Caenorhabditis elegans Hypothetical ... 29 2.9
AC006696-5|AAF39987.1| 141|Caenorhabditis elegans Hypothetical ... 29 2.9
Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 3.8
Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical p... 28 5.0
Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical pr... 28 6.6
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 28 6.6
U64859-3|AAC69093.2| 447|Caenorhabditis elegans Innexin protein... 28 6.6
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr... 28 6.6
AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear recep... 28 6.6
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 28 6.6
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 28 6.6
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 28 6.6
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 28 6.6
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 28 6.6
Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical pr... 27 8.7
DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding p... 27 8.7
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 73.7 bits (173), Expect = 1e-13
Identities = 29/47 (61%), Positives = 40/47 (85%)
Frame = +3
Query: 114 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 254
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYS 56
Score = 65.3 bits (152), Expect = 4e-11
Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +2
Query: 170 PNDA*RLTPRFRKVRRSW*YLHSQRSVH-RESRGFAFVRFFERRDAEEALDTMDGRMLDX 346
PND R R+ + +H R + R+S+GF FVRF+ERRDAE ALD DG+++D
Sbjct: 32 PNDLRRTFERYGDIGD----VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87
Query: 347 RELRVQMARY 376
RELRV +A+Y
Sbjct: 88 RELRVTLAKY 97
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 73.7 bits (173), Expect = 1e-13
Identities = 29/47 (61%), Positives = 40/47 (85%)
Frame = +3
Query: 114 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYT 254
R P I+G+ SLK+DNL+Y+TTP DLRR FER G++GD++IPRD+Y+
Sbjct: 10 RAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYS 56
Score = 65.3 bits (152), Expect = 4e-11
Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +2
Query: 170 PNDA*RLTPRFRKVRRSW*YLHSQRSVH-RESRGFAFVRFFERRDAEEALDTMDGRMLDX 346
PND R R+ + +H R + R+S+GF FVRF+ERRDAE ALD DG+++D
Sbjct: 32 PNDLRRTFERYGDIGD----VHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDG 87
Query: 347 RELRVQMARY 376
RELRV +A+Y
Sbjct: 88 RELRVTLAKY 97
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
+GFAF+R R AE A + +DGR++ R++RV+ A +G
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHG 188
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/39 (43%), Positives = 27/39 (69%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
+GFAF+R R AE A + +DGR++ R++RV+ A +G
Sbjct: 150 KGFAFLRLDTRAHAESAKEAIDGRIIHGRQVRVRFAVHG 188
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 269 FAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
FAFV F + RDAE+A+ DG D R +RV+ R
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 269 FAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
FAFV F + RDAE+A+ DG D R +RV+ R
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR 82
>U28738-11|AAK68399.3| 166|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform b protein.
Length = 166
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELR--VQMAR 373
GFAFV F + RDAE+A +DG+ ++ +R V+MAR
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
>U28738-10|AAK72066.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform d protein.
Length = 208
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELR--VQMAR 373
GFAFV F + RDAE+A +DG+ ++ +R V+MAR
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
>U28738-9|AAA68314.3| 208|Caenorhabditis elegans Sr protein
(splicing factor) protein5, isoform a protein.
Length = 208
Score = 37.1 bits (82), Expect = 0.011
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELR--VQMAR 373
GFAFV F + RDAE+A +DG+ ++ +R V+MAR
Sbjct: 36 GFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMAR 73
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
RGFAF+ F E A+ A++ M+G + R LRV +A
Sbjct: 46 RGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLA 81
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R S G+A+V F + DAE ALDTM+ ++ R +R+ ++
Sbjct: 95 RLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQ 134
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S+GF FV F + +A A+ M+ +M+ + L V +A+
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQ 419
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 35.9 bits (79), Expect = 0.025
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R S G+A+V F + DAE ALDTM+ ++ R +R+ ++
Sbjct: 95 RLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWSQ 134
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S+GF FV F + +A A+ M+ +M+ + L V +A+
Sbjct: 382 SKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQ 419
>U41007-10|AAL32214.1| 118|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform c protein.
Length = 118
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 197 RFRKVRRSW*YLHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
RF ++R+ W V R GFAFV + + RDAE+A+ +DG + RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-9|AAL32213.1| 153|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform b protein.
Length = 153
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 197 RFRKVRRSW*YLHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
RF ++R+ W V R GFAFV + + RDAE+A+ +DG + RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>U41007-8|AAA82270.1| 179|Caenorhabditis elegans Sr protein
(splicing factor) protein6, isoform a protein.
Length = 179
Score = 35.9 bits (79), Expect = 0.025
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +2
Query: 197 RFRKVRRSW*YLHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
RF ++R+ W V R GFAFV + + RDAE+A+ +DG + RV+++
Sbjct: 25 RFGRIRKVW--------VARRPPGFAFVEYDDVRDAEDAVRALDGSRICGVRARVELS 74
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RGFAFV F E A+ A+D +G + R LRV +A+
Sbjct: 45 RGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLAQ 81
Score = 33.1 bits (72), Expect = 0.18
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
S+ V N ++TT +DL F + G V ++ I DR TG+
Sbjct: 5 SVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGR 43
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 35.1 bits (77), Expect = 0.044
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+ +G+ FV + R DAE A+D M+G L R +R A
Sbjct: 171 KGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA 208
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 35.1 bits (77), Expect = 0.044
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
S+ V N+ +++T ++ F CG+V + IP+D++TG
Sbjct: 47 SVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTG 84
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S GF FV+F+ DA+ AL M G +LD L ++++
Sbjct: 688 SMGFGFVQFYTAFDAKTALKDMQGELLDGHSLELKIS 724
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +3
Query: 159 NLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
NL Y T +DL+ +F++ GEV ++ + D+ TG
Sbjct: 285 NLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTG 317
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
RGFAFV F E A+ A++ ++G + R LRV A
Sbjct: 47 RGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYA 82
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 34.7 bits (76), Expect = 0.058
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 61 KSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 98
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 34.7 bits (76), Expect = 0.058
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 71 KSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 108
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 34.7 bits (76), Expect = 0.058
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 174 KSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 269 FAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+AFV F + A +AL TM+ R+L RE++V A
Sbjct: 86 YAFVEFSDHGQASQALQTMNKRLLLDREMKVNWA 119
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 34.7 bits (76), Expect = 0.058
Identities = 14/38 (36%), Positives = 25/38 (65%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+S+G+ FV + +R +AE A++ M+G+ L R +R A
Sbjct: 142 KSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 179
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R S G+A+V F + DAE A+DTM+ L + +R+ ++
Sbjct: 70 RLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQ 109
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 245 SVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+V +S+GF FV F +AE A+ + ++ +L++ + R
Sbjct: 246 TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R S G+A+V F + DAE A+DTM+ L + +R+ ++
Sbjct: 70 RLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQ 109
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 245 SVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+V +S+GF FV F +AE A+ + ++ +L++ + R
Sbjct: 186 TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 228
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R S G+A+V F + DAE A+DTM+ L + +R+ ++
Sbjct: 70 RLSLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQ 109
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 245 SVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+V +S+GF FV F +AE A+ + ++ +L++ + R
Sbjct: 246 TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 288
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 33.1 bits (72), Expect = 0.18
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
S+ + N+ + +T E++ F+ CG++ IP+D++T K
Sbjct: 56 SVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKK 94
>Z81037-3|CAB02750.1| 205|Caenorhabditis elegans Hypothetical
protein C17E4.5 protein.
Length = 205
Score = 32.7 bits (71), Expect = 0.23
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
S+ V N+ Y T E++ + F CG V + I DR++G
Sbjct: 79 SVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSG 116
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
R S+GF FV +DAE A + G M++ R++ V A
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 132 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 236
DG L V N+ +R DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
R S+GF FV +DAE A + G M++ R++ V A
Sbjct: 189 RGSKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCA 227
Score = 30.7 bits (66), Expect = 0.94
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 132 DGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYI 236
DG L V N+ +R DL+ +FE+ G V D+ I
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEI 184
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 32.7 bits (71), Expect = 0.23
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 188 LTPRFRKVRRSW*YLHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLD-XRELRVQ 364
L P F K + W + SRG+AFV + + DA A T DG + + L+V
Sbjct: 216 LVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVN 275
Query: 365 MA 370
++
Sbjct: 276 VS 277
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -2
Query: 518 PLEPLSQSESDCGNGCGYDCASNYDGGNETWTCAC 414
P EP S + C CG D YD N + C C
Sbjct: 1005 PSEPAVLSTASCNPNCGPDAQCVYDDHNRQYRCEC 1039
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
++S+G+ FV F +++AE A+ M+G+ + R +R A
Sbjct: 173 QKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWA 211
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 31.5 bits (68), Expect = 0.54
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELR 358
GF FV ++ R DAE AL + +D R +R
Sbjct: 79 GFCFVEYYTREDAELALQNISNTRMDDRVIR 109
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 31.5 bits (68), Expect = 0.54
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
S+ + N+ + +T E++ F+ CG + IP+D++T K
Sbjct: 62 SVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKK 100
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RGF FV F DA A+D M+ L + +RV AR
Sbjct: 52 RGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFAR 88
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 120 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
P + + L V + +DLR +FE+ G++ + I +D+YTG
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTG 67
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRML 340
GF FV F ++RDAE+A+ ++G+ L
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKEL 61
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRML 340
GF FV F ++RDAE+A+ ++G+ L
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKEL 61
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRML 340
GF FV F ++RDAE+A+ ++G+ L
Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKEL 61
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+GFAF+ F ++ AL+ M+G+ L R + V A
Sbjct: 141 SKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 177
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+GFAF+ F ++ AL+ M+G+ L R + V A
Sbjct: 151 SKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYA 187
>U00052-10|AAK21429.2| 289|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 5 protein.
Length = 289
Score = 31.1 bits (67), Expect = 0.71
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQM 367
RG+ +V + DAE+++ MDG +D + V+M
Sbjct: 175 RGYGYVEYDNLEDAEKSIKHMDGGQIDGMAVHVEM 209
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.1 bits (67), Expect = 0.71
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 120 PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
P + + L V + +DLR +FE+ G++ + I +D+YTG
Sbjct: 22 PVKDPDAIKLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTG 67
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 174 TTPEDLRRVFERCGEVGDIYIPRDRYTG 257
TT EDL +F R G++ + I RDR +G
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 174 TTPEDLRRVFERCGEVGDIYIPRDRYTG 257
TT EDL +F R G++ + I RDR +G
Sbjct: 252 TTDEDLEIIFSRFGKINNCEIVRDRRSG 279
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 174 TTPEDLRRVFERCGEVGDIYIPRDRYTG 257
TT EDL +F R G++ + I RDR +G
Sbjct: 183 TTDEDLEIIFSRFGKINNCEIVRDRRSG 210
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 245 SVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+V +S+GF FV F +AE A+ + ++ +L++ + R
Sbjct: 183 TVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCR 225
>Z98877-11|CAB63408.1| 887|Caenorhabditis elegans Hypothetical
protein Y69H2.11 protein.
Length = 887
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Frame = -2
Query: 485 CGNGCGYDCASNYDGGNETWTCACD---RNDSCMAMRGDHIA-PSEREAPCXPTFVRPSC 318
C NG CAS DG +TC CD +C M I P + C P F C
Sbjct: 383 CNNG---KCASTIDGITTNYTCTCDDGWTGTNCDTMIDFCIPNPCSYNSTCKPKFKGYDC 439
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
GF FV F ++RDA++A+ ++G+ L + ++ R
Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPR 71
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
+ L+Y + D+ VF + GEV +I + RD+ TGK
Sbjct: 42 IGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTGK 77
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
+S+GFAF+ + ++R A+D +G L R +RV
Sbjct: 77 KSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRV 111
>AC024818-2|AAF60781.1| 302|Caenorhabditis elegans Temporarily
assigned gene nameprotein 262 protein.
Length = 302
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARY 376
+S+G+ FV F + D A+ MDG+ + R ++++ + +
Sbjct: 242 KSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSAW 281
>AC006696-7|AAF39988.1| 140|Caenorhabditis elegans Hypothetical
protein W08E12.3 protein.
Length = 140
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -2
Query: 482 GNGCGYDCASNYDGGNETWTCACDRND--SCMAMRGDHIAPSEREAPCXPTFVRPS 321
GN CG C N G T + N+ SC G AP P P F++PS
Sbjct: 47 GNNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPVCAPMCNSCPPQPIFIQPS 100
>AC006696-6|AAF39986.1| 141|Caenorhabditis elegans Hypothetical
protein W08E12.4 protein.
Length = 141
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -2
Query: 482 GNGCGYDCASNYDGGNETWTCACDRND--SCMAMRGDHIAPSEREAPCXPTFVRPS 321
GN CG C N G T + N+ SC G AP P P F++PS
Sbjct: 47 GNNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQPIFIQPS 100
>AC006696-5|AAF39987.1| 141|Caenorhabditis elegans Hypothetical
protein W08E12.5 protein.
Length = 141
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Frame = -2
Query: 482 GNGCGYDCASNYDGGNETWTCACDRND--SCMAMRGDHIAPSEREAPCXPTFVRPS 321
GN CG C N G T + N+ SC G AP P P F++PS
Sbjct: 47 GNNCG--CNGNNCGPQVTVVQVPNNNNGCSCSPCNGPICAPMCNSCPPQPIFIQPS 100
>Z92826-4|CAB07322.1| 309|Caenorhabditis elegans Hypothetical
protein C18D11.4 protein.
Length = 309
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
L V NL+ TT +DLR VF GE+ + DR +G
Sbjct: 78 LGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSG 114
>Z82262-2|CAB05152.1| 248|Caenorhabditis elegans Hypothetical
protein C43F9.5 protein.
Length = 248
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/28 (50%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = -2
Query: 485 CGNGC--GYDCASNYDGGNETWTCACDR 408
C NGC GY C SN G TCA R
Sbjct: 197 CSNGCPTGYSCNSNTGNGYCCATCASGR 224
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 500 QSESDCGNGCGYDCASNYDGGNETWTCACDRNDSC 396
Q +++CG GCG C+ GG + C+ SC
Sbjct: 2125 QQQNNCGGGCGGGCS----GGGNSCGGGCNSGGSC 2155
>Z98877-12|CAB63409.1| 528|Caenorhabditis elegans Hypothetical
protein Y69H2.12 protein.
Length = 528
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Frame = -2
Query: 485 CGNGCGYDCASNYDGGNETWTCACD---RNDSCMAMRGDHIA-PSEREAPCXPTFVRPSC 318
C NG DC + DG +TC CD ++C M I P + C P F +C
Sbjct: 445 CVNG---DCQTTVDGITTNYTCTCDSGWTGENCDTMIDYCIPNPCSYNSTCSPYFKGFNC 501
>Z83240-1|CAB05815.2| 373|Caenorhabditis elegans Hypothetical
protein T23H4.2 protein.
Length = 373
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXR 349
E+ +AF+R +RR ++AL+ M+ +D R
Sbjct: 270 ENARYAFLRSLQRRCTDKALENMEDESMDCR 300
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>U64859-3|AAC69093.2| 447|Caenorhabditis elegans Innexin protein 5
protein.
Length = 447
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 195 RVFERCGEVGDIYIPRDRYTGKVEDSPS*GFSSVVMLKKPWTRWTDECWTAGSFAFRW 368
R F+R E DI DR++ + S GFS+++M + +CW F W
Sbjct: 10 RKFQRSAESNDI---ADRFSYQYT-STLLGFSAIMMAASQYVGRPIQCWVPAQFTRTW 63
>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
F40H6.5 protein.
Length = 1288
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 84 ISILFKMSYGRPPPRIDGMVSLKVDNL 164
I ++F ++ G PPP IDG + + +D L
Sbjct: 1238 IYMMFNVNQGGPPPVIDGYLEITLDCL 1264
>AY204178-1|AAO39182.1| 373|Caenorhabditis elegans nuclear receptor
NHR-69 protein.
Length = 373
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXR 349
E+ +AF+R +RR ++AL+ M+ +D R
Sbjct: 270 ENARYAFLRSLQRRCTDKALENMEDESMDCR 300
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = -2
Query: 473 CGYDCASNYDGGNETWTCACDRNDSCMAMRGD-HIAPSEREAPC 345
C CA N G N TC+C C G H P A C
Sbjct: 843 CDQSCAPNTYGPNCAHTCSCVNGAKCDESDGSCHCTPGFYGATC 886
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Frame = -2
Query: 473 CGYDCASNYDGGNETWTCACDRNDSCMAMRGD-HIAPSEREAPC 345
C CA N G N TC+C C G H P A C
Sbjct: 843 CDQSCAPNTYGPNCAHTCSCVNGAKCDESDGSCHCTPGFYGATC 886
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 330 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 366
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 305 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 341
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+G+AF + + ++A+ ++G L ++L VQ+A
Sbjct: 308 SKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLA 344
>Z36238-4|CAD82915.1| 286|Caenorhabditis elegans Hypothetical
protein R74.5b protein.
Length = 286
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
R S+GF FV DA+ A +G ++ R + V +A
Sbjct: 18 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 56
>Z36238-3|CAA85276.1| 404|Caenorhabditis elegans Hypothetical
protein R74.5a protein.
Length = 404
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
R S+GF FV DA+ A +G ++ R + V +A
Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
>DQ485531-1|ABF22491.1| 404|Caenorhabditis elegans RNA-binding
protein ASD-1 protein.
Length = 404
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
R S+GF FV DA+ A +G ++ R + V +A
Sbjct: 136 RGSKGFGFVTMQNPDDADRARAEFNGTTIEGRRVEVNLA 174
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,816,610
Number of Sequences: 27780
Number of extensions: 252817
Number of successful extensions: 929
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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