Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0083
(651 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 53 2e-07
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 53 2e-07
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 47 9e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 46 2e-05
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 46 3e-05
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 42 3e-04
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 41 6e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 40 0.002
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 39 0.003
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 39 0.003
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 39 0.003
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 39 0.003
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 39 0.003
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 39 0.003
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 38 0.004
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 38 0.004
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 38 0.006
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 38 0.006
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 37 0.010
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 37 0.010
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 37 0.013
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 37 0.013
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 36 0.018
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 36 0.018
At2g47310.1 68415.m05906 flowering time control protein-related ... 36 0.018
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 36 0.023
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 36 0.023
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 36 0.023
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 36 0.031
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 36 0.031
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 36 0.031
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 35 0.041
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 35 0.041
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 35 0.041
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 35 0.054
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 35 0.054
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 35 0.054
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 34 0.071
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 34 0.071
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 34 0.071
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 34 0.071
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 34 0.071
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 34 0.071
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 34 0.071
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 34 0.071
At1g67770.1 68414.m07733 RNA-binding protein, putative similar t... 34 0.071
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 34 0.094
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 34 0.094
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 34 0.094
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 34 0.094
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 34 0.094
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 34 0.094
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 33 0.12
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 33 0.12
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 33 0.12
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 33 0.12
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 33 0.12
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 33 0.16
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 33 0.16
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 33 0.16
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 33 0.16
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 33 0.16
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 33 0.16
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 33 0.16
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 33 0.22
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 33 0.22
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 32 0.29
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 32 0.29
At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing ... 32 0.29
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 32 0.29
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 32 0.29
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 32 0.29
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 32 0.29
At3g26120.1 68416.m03257 RNA-binding protein, putative similar t... 32 0.38
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 32 0.38
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 32 0.38
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 32 0.38
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 32 0.38
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 32 0.38
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 31 0.50
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 31 0.50
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 31 0.50
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 31 0.50
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 0.50
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 31 0.50
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.66
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 31 0.88
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 31 0.88
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 31 0.88
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 31 0.88
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 31 0.88
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 30 1.2
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 30 1.2
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 30 1.2
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 30 1.2
At1g47620.1 68414.m05289 cytochrome P450, putative similar to cy... 30 1.5
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 29 2.0
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 29 2.0
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 29 2.0
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 29 2.0
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 29 2.0
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 29 2.0
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 29 2.0
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 29 2.0
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 29 2.0
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 29 2.0
At5g47850.1 68418.m05912 protein kinase, putative contains simil... 29 2.7
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 29 2.7
At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing ... 29 2.7
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 29 2.7
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 29 2.7
At1g30680.1 68414.m03751 toprim domain-containing protein contai... 29 2.7
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 29 3.5
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 29 3.5
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 29 3.5
At2g40800.1 68415.m05033 expressed protein 29 3.5
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 29 3.5
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 29 3.5
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 29 3.5
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 29 3.5
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 29 3.5
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 29 3.5
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 29 3.5
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 28 4.7
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 28 4.7
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 28 4.7
At5g51300.2 68418.m06360 splicing factor-related contains simila... 28 4.7
At5g51300.1 68418.m06359 splicing factor-related contains simila... 28 4.7
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 28 4.7
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 28 4.7
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 28 4.7
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 28 4.7
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 28 4.7
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 28 4.7
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 28 4.7
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 28 4.7
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 28 6.2
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 28 6.2
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 28 6.2
At5g03480.1 68418.m00304 expressed protein ; expression support... 28 6.2
At4g16280.1 68417.m02469 flowering time control protein / FCA ga... 28 6.2
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 28 6.2
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 28 6.2
At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identic... 28 6.2
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 28 6.2
At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)... 28 6.2
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 27 8.2
At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger) fa... 27 8.2
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 27 8.2
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 27 8.2
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +3
Query: 108 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR TG
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54
Score = 51.6 bits (118), Expect = 4e-07
Identities = 21/41 (51%), Positives = 33/41 (80%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
+SRGFAFVR+ + +A +A++ +DGR++D RE+ VQ A+YG
Sbjct: 55 DSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/51 (50%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Frame = +3
Query: 108 YGRP-PPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
+GR PP I SL V N+T+RTT +DL +F + G+V D++IPRDR TG
Sbjct: 4 FGRSGPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTG 54
Score = 51.6 bits (118), Expect = 4e-07
Identities = 21/41 (51%), Positives = 33/41 (80%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
+SRGFAFVR+ + +A +A++ +DGR++D RE+ VQ A+YG
Sbjct: 55 DSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFAKYG 95
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 47.2 bits (107), Expect = 9e-06
Identities = 23/38 (60%), Positives = 26/38 (68%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
SL V NL + EDLRR FE+ G V DIY+PRD YTG
Sbjct: 38 SLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTG 75
Score = 37.1 bits (82), Expect = 0.010
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+ RGF F++F + DA EA MDG +L REL V A
Sbjct: 76 DPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 46.0 bits (104), Expect = 2e-05
Identities = 22/38 (57%), Positives = 26/38 (68%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
SL V NL + EDLR+ FE+ G V DIY+PRD YTG
Sbjct: 37 SLLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTG 74
Score = 35.9 bits (79), Expect = 0.023
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+ RGF FV+F + DA +A MDG +L REL V A
Sbjct: 75 DPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
SL V N+ PE+LR FER G V D+YIPRD Y+G+
Sbjct: 48 SLLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQ 86
Score = 33.5 bits (73), Expect = 0.12
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+ RGFAFV F + DA EA +M+ R RE+ V +A
Sbjct: 86 QPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVVVA 123
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 135 GMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
G L + NL P DLR FER G + DIY+PR+ YTG+
Sbjct: 45 GPSGLLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGE 86
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
E RGF FV++ DA EA+ M+ +++ RE+ + A
Sbjct: 86 EPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFA 123
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V NLT+RTT +DLRR FE+ G+V D + + Y G+
Sbjct: 16 VGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGR 51
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
R+SRG AFV + R DA +A +MD ++L+ R+L V +A
Sbjct: 95 RQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTVSIA 133
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
SRGF FV F ++DA+ A++ M+G+ L R++R A G
Sbjct: 184 SRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKG 223
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +2
Query: 194 PRFRKVRRSW*YLHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
P +++ S + S + + ++ + FV +F+RR A A+ +++GR L + ++V A
Sbjct: 73 PLLQEIFTSTGPVESSKLIRKDKSSYGFVHYFDRRSAALAILSLNGRHLFGQPIKVNWA 131
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
G+AFV F + RDAE+A+ DG D LRV++A G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
G+AFV F + RDAE+A+ DG D LRV++A G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
G+AFV F + RDAE+A+ DG D LRV++A G
Sbjct: 46 GYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/37 (54%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF FV F E DA A D MDG+ L R LR+ A
Sbjct: 81 SRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFA 117
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +2
Query: 251 HRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+++ R F FV F ER DA A+D MDG L R L V A
Sbjct: 50 NQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYA 89
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/42 (38%), Positives = 29/42 (69%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
+ S+G+AF++F + DA A++TMD RM + R + + +A+ G
Sbjct: 78 KRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDIAKPG 119
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
SRGF FV F ++DA+ A+D + G+ L R++R A G
Sbjct: 179 SRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKG 218
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/47 (29%), Positives = 28/47 (59%)
Frame = +2
Query: 230 LHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+ S + + +E + FV +F+RR A A+ +++GR L + ++V A
Sbjct: 80 VESCKLIRKEKSSYGFVHYFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
SRGF FV F ++DA+ A++ M+G+ + R++R A G
Sbjct: 192 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKG 231
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 230 LHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+ S + + ++ + FV +F+RR A A+ T++GR + + ++V A
Sbjct: 89 IESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
SRGF FV F ++DA+ A++ M+G+ + R++R A G
Sbjct: 188 SRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKG 227
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = +2
Query: 230 LHSQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+ S + + ++ + FV +F+RR A A+ T++GR + + ++V A
Sbjct: 89 IESCKLIRKDKSSYGFVHYFDRRCASMAIMTLNGRHIFGQPMKVNWA 135
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
G+AFV F + RDA++A+ DG D LRV++A G
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGG 83
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 37.1 bits (82), Expect = 0.010
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
G+AFV F + RDA++A+ DG D LRV++A G
Sbjct: 46 GYAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGG 83
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF FV F A A+ MDG+ L+ R++RV +A
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 36.7 bits (81), Expect = 0.013
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF FV F A A+ MDG+ L+ R++RV +A
Sbjct: 75 SRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 36.3 bits (80), Expect = 0.018
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = +3
Query: 123 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
P+ + +L V L+ RTT E LR F + GEV D + DR +G
Sbjct: 50 PQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSG 94
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S+GF FVR+ D+ + + MDG+ LD + + AR
Sbjct: 96 SKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYAR 133
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/37 (45%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF FV F R DA+ A++ ++G D LRV+ A
Sbjct: 253 SRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 36.3 bits (80), Expect = 0.018
Identities = 17/44 (38%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 132 DGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
DG ++ L V ++ T D+R+VFE+ G V +I +P+D+ TG+
Sbjct: 106 DGSIAKLYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKMTGE 149
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 35.9 bits (79), Expect = 0.023
Identities = 14/37 (37%), Positives = 26/37 (70%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+GF F+ F DA +AL ++DG+++D R + V++A+
Sbjct: 48 KGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAK 84
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 35.9 bits (79), Expect = 0.023
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRGF F+ F E++ +EA+ M+G LD R + V A+
Sbjct: 47 SRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQ 84
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 35.9 bits (79), Expect = 0.023
Identities = 15/38 (39%), Positives = 26/38 (68%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRG+ FV + + + E AL+++DG L+ R +RV +A+
Sbjct: 217 SRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQ 254
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+SRGFAFV D +D +DG R L+V A
Sbjct: 124 QSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA 161
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L V NL++ T E L F CG+V + D TG+
Sbjct: 179 LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGR 216
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 35.5 bits (78), Expect = 0.031
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF FV F + A A+ MDG+ L+ R +RV A
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 35.5 bits (78), Expect = 0.031
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF FV F + A A+ MDG+ L+ R +RV A
Sbjct: 75 SRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 35.5 bits (78), Expect = 0.031
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +3
Query: 99 KMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
K S G P +DG + + NL + TT D+R++F C + + + +++ TG+
Sbjct: 248 KTSSGFAPEMVDGYNRVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGE 300
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 35.1 bits (77), Expect = 0.041
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
SRGF FV + +AE A+ MDG+ L+ R + V++ G
Sbjct: 43 SRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSVKLFGIG 82
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 269 FAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
+ FV F RDAE+A+ DG LD LRV++A G
Sbjct: 47 YCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVELAHGG 83
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 35.1 bits (77), Expect = 0.041
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
G+AFV F + RDA++A+ DG D LRV++A G
Sbjct: 46 GYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIAHGG 83
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 34.7 bits (76), Expect = 0.054
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
R+S G+ +V F + DA+ A++ M+G+ D R + V+ + G
Sbjct: 115 RQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKFGQPG 156
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 34.7 bits (76), Expect = 0.054
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQ 364
SRGF FV F R DA+ A++ ++G D LRV+
Sbjct: 214 SRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVE 248
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 34.7 bits (76), Expect = 0.054
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+GF FV + ++ + A+ ++DG LD R++RV A
Sbjct: 244 SKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
SRGF FV + E A +G LD R LRV
Sbjct: 131 SRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRV 164
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRGF FV F + + +A++ M+G+ LD R + V A+
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T EDL+R F + G+V D I DR +G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRGF FV F + + +A++ M+G+ LD R + V A+
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T EDL+R F + G+V D I DR +G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRGF FV F + + +A++ M+G+ LD R + V A+
Sbjct: 46 SRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T EDL+R F + G+V D I DR +G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF FV + + EA+ +DG+ L+ R +RV +A
Sbjct: 284 SRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R +AFV F + RDA++A +DGR D + V+ +R
Sbjct: 3 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 39
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R +AFV F + RDA++A +DGR D + V+ +R
Sbjct: 44 RDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSR 80
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRGF FV F + + ++A++ M+G+ LD R + V A+
Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRGF FV F + + ++A++ M+G+ LD R + V A+
Sbjct: 48 SRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
terminal ear1 gb|AAC39463.1
Length = 527
Score = 34.3 bits (75), Expect = 0.071
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +2
Query: 275 FVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
FV FF+ RDA +AL M+G+++ + + +Q +R G
Sbjct: 223 FVEFFDVRDAAKALRVMNGKVISGKPMVIQFSRPG 257
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 33.9 bits (74), Expect = 0.094
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQ 364
ESRGFAF+ F A A+ MDGR++ + L VQ
Sbjct: 55 ESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQ 90
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.9 bits (74), Expect = 0.094
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 108 YGRPPPRIDGMVS-LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 245
YGR P G+ + + V L + +DLR F R G + D YIP+D
Sbjct: 228 YGRGEPTTRGIGNKIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKD 274
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 186 DLRRVFERCGEVGDIYIPRDRYTGK 260
D R FER GE+ D+Y+P+D Y K
Sbjct: 106 DFRSHFERYGEITDLYMPKD-YNSK 129
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/38 (39%), Positives = 25/38 (65%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S+ F FV + + A+ A+D M+GR L ++L+VQ+ R
Sbjct: 389 SKCFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLKR 426
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF F+ F + + AL TM+G ++ R LR+ +A
Sbjct: 259 SRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.9 bits (74), Expect = 0.094
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
RGF F+ F +RR A++A+ M GR L + + V A
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKA 88
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R +AFV F + RDA++A +DGR D + V+ +R
Sbjct: 44 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 80
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R +AFV F + RDA++A +DGR D + V+ +R
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASR 39
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 33.5 bits (73), Expect = 0.12
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTG 257
L + NL ++ P D++ VF G V D++IP++ TG
Sbjct: 333 LIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETG 369
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARY 376
E RGFAFV+F + D A++ +G + R + V+ A +
Sbjct: 59 EHRGFAFVKFALQEDVNRAIELKNGSTVGGRRITVKQAAH 98
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
+GFAFV+F ++DA A+ +G M R + V A
Sbjct: 372 KGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWA 407
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 105 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
SY R P + V L + T +++RR FE+ GE+ + I D+ TGK
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 33.5 bits (73), Expect = 0.12
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 105 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
SY R P + V L + T +++RR FE+ GE+ + I D+ TGK
Sbjct: 5 SYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGK 56
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF FV F A A+ +DGR L R ++V A
Sbjct: 80 SRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + + Y + LR F + GEV D + DR TG+
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGR 79
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
S+ V N+ Y TPE++++ F+ CG V + I D++
Sbjct: 104 SIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF 139
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+GF FV ++ ++A+++++G LD R++RV A
Sbjct: 289 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 325
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +3
Query: 12 CDAVVLY*SEF-NNIVLLNSFDLS*ISILFKMSYGRPPPRIDGMVSLK--VDNLTYRTTP 182
C + Y S F N+ + + F++ + P R LK V NL++
Sbjct: 53 CSSPAEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDS 112
Query: 183 EDLRRVFERCGEVGDIYIPRDRYTGK 260
L ++FE G V + + D+ TG+
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGR 138
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+GF FV ++ ++A+++++G LD R++RV A
Sbjct: 297 SKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333
Score = 27.5 bits (58), Expect = 8.2
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +3
Query: 12 CDAVVLY*SEF-NNIVLLNSFDLS*ISILFKMSYGRPPPRIDGMVSLK--VDNLTYRTTP 182
C + Y S F N+ + + F++ + P R LK V NL++
Sbjct: 53 CSSPAEYPSRFVRNVAVSSDFEVEEDDMFADGDDSAPVERNSFSPDLKLFVGNLSFNVDS 112
Query: 183 EDLRRVFERCGEVGDIYIPRDRYTGK 260
L ++FE G V + + D+ TG+
Sbjct: 113 AQLAQLFESAGNVEMVEVIYDKVTGR 138
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 123 PRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRD 245
P G L V NL + +DLR+VFE G V + +PRD
Sbjct: 279 PYSGGARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD 319
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
V +GFAF+R+ +A +A+ M G+ LD R + V+ A+
Sbjct: 113 VANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAK 154
Score = 28.3 bits (60), Expect = 4.7
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +3
Query: 87 SILFKMSYGRPPPRIDG-MVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
S L S PP G L V L++RTT + LR FE+ G + + + D+ +
Sbjct: 58 SCLSTDSSSSPPSSSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANR 116
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+S+GF FV F DA A+D ++G+ D +E V A+
Sbjct: 262 KSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQ 300
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRG FV F +A A+ M+G+M+ + L V +A+
Sbjct: 366 SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQ 403
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
+S+G+ FV++ A+ A+D ++G +L+ +++ V
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 32.7 bits (71), Expect = 0.22
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+G+ FVRF + + AL M+G R++RV +A
Sbjct: 243 SKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIA 279
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 32.7 bits (71), Expect = 0.22
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGFAFV F +A A+ +DG+ L R +RV A
Sbjct: 74 SRGFAFVTFTSTEEASNAMQ-LDGQDLHGRRIRVNYA 109
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V ++Y T LR F + GEV D I DR TG+
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGR 73
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 236 SQRSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S R R SRGF FV+ + A+ +DG+ L+ R ++V +A
Sbjct: 240 SDRETGR-SRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVA 283
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 114 RPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
R P D + V NL + L R+F G+V D + DR TG+
Sbjct: 198 RQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGR 246
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 32.3 bits (70), Expect = 0.29
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +3
Query: 105 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
+Y PP ++ V NL T E+L++ F + GEV + IP + G V+
Sbjct: 225 AYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQ 278
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+G+ FV+F E + A+ M+G R +R+ A
Sbjct: 157 SKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAA 193
>At5g16260.1 68418.m01899 RNA recognition motif (RRM)-containing
protein similar to Tat-SF1 - Homo sapiens, GI:1667611;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 519
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQM 367
+G VRF +RRDA++ ++ M+GR R++ +
Sbjct: 454 QGVVLVRFKDRRDAQKCIEAMNGRWYAKRQIHASL 488
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.3 bits (70), Expect = 0.29
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF F+ F +RR +E++ M GR R + V A
Sbjct: 47 SRGFGFITFADRRAMDESIREMHGRDFGDRVISVNRA 83
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 32.3 bits (70), Expect = 0.29
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 183 EDLRRVFERCGEVGDIYIPRDRYTG 257
++LR F +CGEV +++P DR TG
Sbjct: 497 KELRSHFSKCGEVTRVHVPTDRETG 521
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 32.3 bits (70), Expect = 0.29
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+G+ FVRF + + A+ M+G R++RV +A
Sbjct: 254 SKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIA 290
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 32.3 bits (70), Expect = 0.29
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRGF FV + +A AL M+G+M+ + L + +A+
Sbjct: 371 SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Score = 29.9 bits (64), Expect = 1.5
Identities = 10/34 (29%), Positives = 24/34 (70%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
S+G+ FV+F + A+ A+D ++G +++ +++ V
Sbjct: 175 SKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
>At3g26120.1 68416.m03257 RNA-binding protein, putative similar to
GB:AAC39463 from [Zea mays], PF00076 RNA recognition
motif (2 copies)
Length = 615
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +2
Query: 275 FVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
FV F++ RDA A D M+G+ + +++ ++ +R G
Sbjct: 253 FVEFYDVRDAARAFDRMNGKEIGGKQVVIEFSRPG 287
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 31.9 bits (69), Expect = 0.38
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQ 364
S+GF FV F + A+D M+G+ LD R + Q
Sbjct: 84 SKGFRFVTFKDEDSMRTAIDRMNGQELDGRNITAQ 118
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 31.9 bits (69), Expect = 0.38
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +3
Query: 105 SYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
SY R P + V L + T +++RR F++ GE+ + I D+ TGK
Sbjct: 5 SYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGK 56
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
RESRGF F+ DA + ++D +L R + V+ AR
Sbjct: 113 RESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKAR 152
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S+ F F+ + + A+ A++TM+G L ++L+VQ+ R
Sbjct: 379 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 416
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 31.9 bits (69), Expect = 0.38
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S+ F F+ + + A+ A++TM+G L ++L+VQ+ R
Sbjct: 370 SKCFGFISYDSQAAAQNAINTMNGCQLSGKKLKVQLKR 407
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
S+ V N+ Y TPE++++ F+ CG V + I D++
Sbjct: 93 SVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF 128
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+GF F+ F DA++AL ++G++++ R + V+ A+
Sbjct: 107 KGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAK 143
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
S+ V N+ Y TPE+++ F+ CG V + I D++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF 125
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 31.5 bits (68), Expect = 0.50
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
S+ V N+ Y TPE+++ F+ CG V + I D++
Sbjct: 90 SVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF 125
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 31.5 bits (68), Expect = 0.50
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+S+GF FV F DA A+++++G D +E V A+
Sbjct: 67 KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQ 105
Score = 30.7 bits (66), Expect = 0.88
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 242 RSVHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R + S+G FV F +A EA+ + G+M++ + L V +A+
Sbjct: 165 RDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 208
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+G+AF+ + RD + A DG+ +D R + V + R
Sbjct: 179 KGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVER 215
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 31.1 bits (67), Expect = 0.66
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T EDL+R F + G+V D I DR +G+
Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGR 45
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRG+ FV F A A+ M+G+ L+ + V +A+
Sbjct: 71 SRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAK 108
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
V S+GF FV F +A++AL +G+ L+ R + V A+
Sbjct: 70 VSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAK 111
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 0.88
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDI 230
L N+ + +TPED+R +FE+ G V DI
Sbjct: 96 LIAQNVPWTSTPEDIRSLFEKYGSVIDI 123
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +3
Query: 96 FKMSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
F+M G + + V L + T + +RR FE+ GE+ + + D+ TG+
Sbjct: 7 FQMEGGNNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGR 61
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 30.7 bits (66), Expect = 0.88
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+SR F FV F + A A++ M+G ++D +EL V A+
Sbjct: 157 KSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQ 195
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S+G FV F +A +A+ M+G+M+ + + V +A+
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQ 299
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/43 (32%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = +2
Query: 242 RSVHR--ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQ 364
R++H ++RGF V +++ R A++A + GR+L R+L ++
Sbjct: 238 RALHTAGKNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIR 280
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLD--XRELRVQMAR 373
SRGFAFV F+ DA +AL+ + L+ + LRV A+
Sbjct: 498 SRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYAK 537
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V + + T DL VF + GE+ D+ + RD+ TGK
Sbjct: 40 VGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGK 75
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
+S+GFAF+ + ++R A+D ++G ++ R ++V
Sbjct: 75 KSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKV 109
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/34 (32%), Positives = 24/34 (70%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
S+G+ FV+F + A+ A+D ++G +L+ +++ V
Sbjct: 171 SKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFV 204
Score = 30.3 bits (65), Expect = 1.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
SRGF FV + +A A+ M+G+M+ + L V +A+
Sbjct: 367 SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQ 404
>At1g47620.1 68414.m05289 cytochrome P450, putative similar to
cytochrome P450 GI:4688670 from [Catharanthus roseus]
Length = 520
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +1
Query: 139 WSR*K*IILPTERR-LKTYAAFSKGAEKLVISTFPEIGTQG 258
W K I + TE++ LK +A F + EK++ + E+G+QG
Sbjct: 235 WKLQKWIGIGTEKKMLKAHATFDRVCEKIIAAKREELGSQG 275
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 29.5 bits (63), Expect = 2.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
S+G+ FVRF + + A+ M+G+ R +R+
Sbjct: 195 SKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
L V +L + T +++ +F + G V D+Y+ RD Y
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY 247
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 230 LHSQRSVHRESRGFAFVRFFERRDAEEALDTMDG 331
++ R +R+SRG FV++ + A A+D ++G
Sbjct: 240 VYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 141 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L V ++ T E++R FE+ G V ++ + +D+ TG+
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQ 159
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRY 251
L V +L + T +++ +F + G V D+Y+ RD Y
Sbjct: 213 LFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEY 247
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 230 LHSQRSVHRESRGFAFVRFFERRDAEEALDTMDG 331
++ R +R+SRG FV++ + A A+D ++G
Sbjct: 240 VYLMRDEYRQSRGCGFVKYSSKETAMAAIDGLNG 273
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = +3
Query: 141 VSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L V ++ T E++R FE+ G V ++ + +D+ TG+
Sbjct: 120 VKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQ 159
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
R +AFV F DA A++++ G L LR++ A+
Sbjct: 58 RSYAFVNFNHDEDAFAAIESLQGFPLSGNPLRIEFAK 94
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF FV F +A++A++++ G L ++L V A
Sbjct: 241 SRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKA 277
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 343
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 100 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 130
Score = 28.7 bits (61), Expect = 3.5
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +2
Query: 245 SVHRESRGFAFVRFFERRDAEEALDTMDGRML--DXRELRVQMAR 373
S+H ++ G+AFV F + RDAE+A+ D R+L V+ A+
Sbjct: 4 SLHIDA-GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 47
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALD-TMDGRMLD 343
R R FAFV+F + DA +ALD T + ++LD
Sbjct: 126 RMRRNFAFVQFATQEDATKALDSTHNSKLLD 156
Score = 27.9 bits (59), Expect = 6.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRML--DXRELRVQMAR 373
G+AFV F + RDAE+A+ D R+L V+ A+
Sbjct: 36 GYAFVYFEDERDAEDAIRRTDNTTFGYGRRKLSVEWAK 73
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVEDSPS*GFSSVVMLKK 311
V +L + EDL++VF GEV ++ I ++ T K + S F++V K+
Sbjct: 218 VGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKR 270
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
++RGFAFV +A+ A+D D + R + V AR
Sbjct: 133 KNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFAR 171
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
SRGF F+ + ++ A+++M G+ L R++ V A
Sbjct: 153 SRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
>At5g47850.1 68418.m05912 protein kinase, putative contains
similarity to cytokinin-regulated kinase 1 [Nicotiana
tabacum] gi|10998537|gb|AAG25966; contains protein
kinase domain, Pfam:PF00069
Length = 751
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -2
Query: 533 CERERPLEPLSQSESDCGN 477
C RE P PLS S+S CGN
Sbjct: 315 CRRECPYRPLSGSQSLCGN 333
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGR 334
V R G+AF+ F + RDA +A+ +DG+
Sbjct: 33 VARRPPGYAFLDFEDPRDARDAIRALDGK 61
>At3g09160.1 68416.m01082 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif (aka RRM, RBD, or RNP domain)
Length = 198
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 186 DLRRVFERCGEVGDIYIPRDR 248
+L+++F CGE+ D++IP R
Sbjct: 42 ELKKLFSPCGEITDVHIPETR 62
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+S+GF FV F +A +A+ T G+M + L V +A+
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 251 HRESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
+R RG+AFV F DA A +T++G + L V A+
Sbjct: 237 NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ 277
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +3
Query: 105 SYGRPPPR--IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
S GRP P+ ++G + L V + T ED+ F GE+ ++ + DR +G V+
Sbjct: 82 SDGRPGPQRSVEGWIIL-VSGVHEETQEEDITNAFGDFGEIKNLNLNLDRRSGYVK 136
>At1g30680.1 68414.m03751 toprim domain-containing protein contains
Pfam profile: PF01751 toprim domain
Length = 709
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 213 GEVGDIYIPRDRYTGKVEDSP 275
G++GD Y+ DR TG DSP
Sbjct: 675 GQIGDAYLCYDRTTGSYSDSP 695
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRM 337
R+S G+ +V F + DA+ A++ M+G++
Sbjct: 96 RQSLGYGYVWFNSKEDAQSAVEAMNGKV 123
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L V +++ T + LR F GEV + RD+ TG+
Sbjct: 8 LFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGR 45
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = +2
Query: 266 GFAFVRFFERRDAEEALDTMDGRML--DXRELRVQMAR 373
G+AFV F + RDAE+A+ +D + R L V+ A+
Sbjct: 36 GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAK 73
>At2g40800.1 68415.m05033 expressed protein
Length = 377
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 355 KLPAVQHSSVHRVQGFFSITTLEKPYEGESSTFPVYR 245
+L + + S +V G F+ ++KP + SSTF YR
Sbjct: 98 RLVSTKSSGFRKVDGSFARKVVDKPVKAVSSTFARYR 134
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S+GF FV + DAE+A M+ + LD + V AR
Sbjct: 74 SKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPAR 111
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 248 VHRESRGFAFVRFFERRDAEEALDTMDGR 334
V R G+AF+ F + RDA +A+ +DG+
Sbjct: 33 VARRPPGYAFLDFEDSRDARDAIREVDGK 61
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMAR 373
S+G FV F +A L+ M+G+M+ + L V +A+
Sbjct: 367 SKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQ 404
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T E LR+ FE+ GE+ + + D+ TG+
Sbjct: 28 VGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGR 63
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELR 358
RG +V F R DAE+A MDG +D + ++
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 263 RGFAFVRFFERRDAEEALDTMDGRMLDXRELR 358
RG +V F R DAE+A MDG +D + ++
Sbjct: 139 RGHGYVEFKARADAEKAQLYMDGAQIDGKVVK 170
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQ 364
RESRGF F+ DA + ++D +L R + V+
Sbjct: 83 RESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVE 119
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + +++ T E LR F G+V + I RDR TG+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + +++ T E LR F G+V + I RDR TG+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + +++ T E LR F G+V + I RDR TG+
Sbjct: 8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGR 45
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+G+ FV++ + + A A+ M+G + R L V++A
Sbjct: 520 SKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMA 370
S+G+ FV++ + + A A+ M+G + R L V++A
Sbjct: 520 SKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIA 556
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 129 IDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
+D + V L TT + + F + GE+ D I +DR TG+
Sbjct: 38 VDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQ 81
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXR 349
R SRGFAFV +DAE + ++ +L+ R
Sbjct: 110 RVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 141
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 28.3 bits (60), Expect = 4.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 254 RESRGFAFVRFFERRDAEEALDTMDGRMLDXR 349
R SRGFAFV +DAE + ++ +L+ R
Sbjct: 109 RVSRGFAFVTMSSLKDAERCIKYLNQSVLEGR 140
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
V L + TT E L VFE GE+ + + D+ TGK +
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAK 145
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
+++GF FV F R+ A+EAL R+L+ R Q+A G
Sbjct: 143 KAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLASMG 182
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
V L + TT E L VFE GE+ + + D+ TGK +
Sbjct: 108 VYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAK 145
Score = 28.3 bits (60), Expect = 4.7
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 257 ESRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
+++GF FV F R+ A+EAL R+L+ R Q+A G
Sbjct: 143 KAKGFGFVMFKTRKGAKEALKEPKKRILN-RTATCQLASMG 182
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 240 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRV 361
S+G+ FVRF + + +A+ M+G R +R+
Sbjct: 238 SKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + +++ T+ + LR F GEV + I +DR TG+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGR 45
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L + +++ T+ + LR F GEV + I +DR TG+
Sbjct: 8 LFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGR 45
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +3
Query: 147 LKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
L V NL + + LR++FE G V + +P D TG+
Sbjct: 267 LYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQ 304
>At5g03480.1 68418.m00304 expressed protein ; expression supported
by MPSS
Length = 321
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 189 LRRVFERCGEVGDIYIPRD 245
L + F CGE+ IY+PRD
Sbjct: 44 LTKHFASCGEITQIYVPRD 62
>At4g16280.1 68417.m02469 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 505
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 242 RSVHRESRGFAFVRFFERRDAEEALDTMDG 331
R +R+SRG FV++ + A A+D ++G
Sbjct: 2 RDEYRQSRGCGFVKYSSKETAMAAIDGLNG 31
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 144 SLKVDNLTYRTTPEDLRRVFERCGEVGDIYIP 239
+L V N+ T+ E L+ +F+R GEV I P
Sbjct: 293 ALYVKNIPENTSTEQLKELFQRHGEVTKIVTP 324
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVE 266
V L + TT E+L+ FE GE+ + + D+ TG+ +
Sbjct: 167 VRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAK 204
>At1g75820.1 68414.m08807 CLAVATA1 receptor kinase (CLV1) identical
to receptor kinase (CLV1) GB:AAB58929 GI:2160756
[Arabidopsis thaliana]
Length = 980
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 111 GRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGKVEDS 272
G PP + G+VSLK +L+ ++ + F G + I + R+ G++ ++
Sbjct: 279 GHIPPELSGLVSLKSLDLSINQLTGEIPQSFINLGNITLINLFRNNLYGQIPEA 332
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 27.9 bits (59), Expect = 6.2
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 153 VDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTGK 260
V L + T E LRR F++ G++ + + D+ TG+
Sbjct: 28 VGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGR 63
>At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)
(MT-Q) (MT-2) identical to Metallothionein-like protein
1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis
thaliana)
Length = 45
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Frame = -2
Query: 497 SESDCGNG----CGYDCASNYDGGNETWTCACDRNDSC 396
++S+CG G CG C+ + E C+C N SC
Sbjct: 2 ADSNCGCGSSCKCGDSCSCEKNYNKECDNCSCGSNCSC 39
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELR 358
S+G+ FVRF + + A+ M+G+ R +R
Sbjct: 214 SKGYGFVRFADESEQIRAMTEMNGQYCSSRPMR 246
>At4g19670.1 68417.m02889 zinc finger (C3HC4-type RING finger)
family protein contains a Prosite:PS00518 Zinc finger,
C3HC4 type (RING finger), signature and Pfam domain
PF01485: IBR domain
Length = 532
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 485 CGNGCGYDCASNYDGGNETWTCA 417
CG+ Y C + Y G +T TCA
Sbjct: 398 CGHEFCYSCGAEYREGQQTCTCA 420
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 485 CGNGCGYDCASNYDGGNETWTCACDRNDSCMAMRGDH 375
CG GCG+ A + G TW D S +A G H
Sbjct: 57 CGGGCGFAMAISEKGKLITWGSTDDEGQSYVA-SGKH 92
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 260 SRGFAFVRFFERRDAEEALDTMDGRMLDXRELRVQMARYG 379
SRGF FV + A A+ M + LD R + V A G
Sbjct: 76 SRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGVHPADSG 115
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,077,807
Number of Sequences: 28952
Number of extensions: 233032
Number of successful extensions: 898
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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