Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0079
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.3  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   7.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -2

Query: 442 VEQNTMFINKSLVL*QKQNVTFEL*QRFISRQWKKMLI 329
           VE NTMFIN    L QK     +L ++ I     +MLI
Sbjct: 334 VESNTMFINILKFLKQKYVKNSKL-EKVIKHDILRMLI 370


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 NSYKYSHNNRTTLEITSNCLQLE*NFD 27
           N+YKY++NN       +NC +L  N +
Sbjct: 94  NNYKYNYNNN---NYNNNCKKLYYNIN 117


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 NSYKYSHNNRTTLEITSNCLQLE*NFD 27
           N+YKY++NN       +NC +L  N +
Sbjct: 94  NNYKYNYNNN---NYNNNCKKLYYNIN 117


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 NSYKYSHNNRTTLEITSNCLQLE*NFD 27
           N+YKY++NN       +NC +L  N +
Sbjct: 94  NNYKYNYNNN---NYNNNCKKLYYNIN 117


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 107 NSYKYSHNNRTTLEITSNCLQLE*NFD 27
           N+YKY++NN       +NC +L  N +
Sbjct: 94  NNYKYNYNNN---NYNNNCKKLYYNIN 117


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -1

Query: 107 NSYKYSHNNR 78
           N+YKY++NN+
Sbjct: 94  NNYKYNYNNK 103


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = +3

Query: 312 YFLNLQINIFFHWREINRCQSS 377
           +++ + + +FF+WR  N   S+
Sbjct: 256 FYIPMLVMLFFYWRIYNAAVST 277


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,564
Number of Sequences: 438
Number of extensions: 3615
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)