Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0079
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13062.3 68416.m01630 expressed protein weak similarity to SP...    27   8.1  
At3g13062.2 68416.m01631 expressed protein weak similarity to SP...    27   8.1  
At3g13062.1 68416.m01629 expressed protein weak similarity to SP...    27   8.1  
At1g23050.1 68414.m02880 hydroxyproline-rich glycoprotein family...    27   8.1  

>At3g13062.3 68416.m01630 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 411

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 381 VTFCFCYKTKLLFINIV----FCSTKKRYVRRLSGGS*P*WSLCQKVPLPDGLAT 533
           V FC+C+ T L  + I+    F S K R+    S  S P  S+ Q +    G++T
Sbjct: 28  VVFCYCWATVLALVFILLYQFFLSRKFRFFSHASSSS-PVVSVSQSLSSQSGIST 81


>At3g13062.2 68416.m01631 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 440

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 381 VTFCFCYKTKLLFINIV----FCSTKKRYVRRLSGGS*P*WSLCQKVPLPDGLAT 533
           V FC+C+ T L  + I+    F S K R+    S  S P  S+ Q +    G++T
Sbjct: 28  VVFCYCWATVLALVFILLYQFFLSRKFRFFSHASSSS-PVVSVSQSLSSQSGIST 81


>At3g13062.1 68416.m01629 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 403

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 381 VTFCFCYKTKLLFINIV----FCSTKKRYVRRLSGGS*P*WSLCQKVPLPDGLAT 533
           V FC+C+ T L  + I+    F S K R+    S  S P  S+ Q +    G++T
Sbjct: 28  VVFCYCWATVLALVFILLYQFFLSRKFRFFSHASSSS-PVVSVSQSLSSQSGIST 81


>At1g23050.1 68414.m02880 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 161

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 547 GSLPNVANPS-GNGTF*HNDHYGQEPPDSLLTY 452
           G++PN  +P  G G    +  YG  PP+++L Y
Sbjct: 79  GNIPNYPSPPYGGGDSSGSSFYGPPPPNAILPY 111


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,804,373
Number of Sequences: 28952
Number of extensions: 246592
Number of successful extensions: 435
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)