Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0077
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    28   1.3  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    28   1.3  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   2.3  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   2.3  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   4.0  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   9.3  

>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 525 VKIID*MSEGAHGPTGVEWLLKLISINNVSTTTYLQT*IISLSFAIQRAP 674
           +++ID  +EG +G     +LLK +   + ST  +L     S+  A +  P
Sbjct: 137 IRVIDGKAEGMYGWLATNYLLKTLEEKDTSTVGFLDMGGASVQIAFELPP 186


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 457 LVYSASTSANVSKATYNSDVDFKSAHVFTRYNLVIKYEIV 338
           LVY +S  +++S   YN D  +KS   F   ++  K +I+
Sbjct: 110 LVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSKVKIL 149


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 561 GPTGVEWLLKLISINNVSTTTYLQT*IISLSFAI 662
           G +G  WL+  ++INN +  TYL+  + +L  ++
Sbjct: 176 GLSGGSWLVGSVAINNFTNITYLRDNVWNLEHSV 209


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 561 GPTGVEWLLKLISINNVSTTTYLQT*IISLSFAI 662
           G +G  WL+  ++INN +  TYL+  + +L  ++
Sbjct: 176 GLSGGSWLVGSVAINNFTNITYLRDNVWNLEHSV 209


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 561 GPTGVEWLLKLISINNVSTTTYLQT*IISLSFAI 662
           G +G  WL+  +++NN +  TYL+  + +L  ++
Sbjct: 140 GLSGGSWLVGSVAVNNFANITYLRDNVWNLEHSV 173


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 733 HQSGHFCPPVNGVSNS 686
           HQS HF  PV GV +S
Sbjct: 66  HQSSHFATPVKGVESS 81


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 773  YKTAGGLTSFW*YPPIWSFLPASKWGFEFG 684
            Y   GGL S   +P ++   P ++WGF+ G
Sbjct: 928  YIQEGGLGSLSSFPHLYMNGPYNQWGFDSG 957


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,955,907
Number of Sequences: 5004
Number of extensions: 56007
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)