Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0077
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574...    29   3.2  

>09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,
            5748588-5748714,5748800-5749119,5749202-5749963,
            5750749-5750898,5751007-5751096,5751196-5751340,
            5751440-5751617,5751753-5752448,5752555-5752753
          Length = 1524

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = +3

Query: 396  STSELYVAFETLADVEAE*TNKKTCFDLPI*CVRLVTFYIIVVVKIID*MSEGAHGPTGV 575
            S+ E+Y AF+    +E    NK+ C ++    V   TF ++V           AHG  G+
Sbjct: 858  SSVEIYSAFKPPLTLEFHNPNKRECLEVEFNNVYPKTFDLLVK------SGTSAHGILGL 911

Query: 576  EWLLKLI 596
             WL +L+
Sbjct: 912  NWLHQLL 918


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,455,302
Number of Sequences: 37544
Number of extensions: 339775
Number of successful extensions: 623
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)