Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0077
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20618| Best HMM Match : PSCyt1 (HMM E-Value=0.64)                   28   7.4  
SB_2100| Best HMM Match : PAPA-1 (HMM E-Value=0.75)                    28   7.4  
SB_142| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.4  
SB_29550| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  

>SB_20618| Best HMM Match : PSCyt1 (HMM E-Value=0.64)
          Length = 266

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 716 LPASKWGFEFGFGSWCPLYCKTETNNSCLKVGGGTYVV 603
           LP S+ GF  G G+   ++C  +T   C++     Y V
Sbjct: 190 LPESQCGFRSGRGTMDMIFCLRQTQEKCIEQNMPLYAV 227


>SB_2100| Best HMM Match : PAPA-1 (HMM E-Value=0.75)
          Length = 403

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 716 LPASKWGFEFGFGSWCPLYCKTETNNSCLKVGGGTYVV 603
           LP S+ GF  G G+   ++C  +T   C++     Y V
Sbjct: 303 LPESQCGFRSGRGTMDMIFCLRQTQEKCIEQNMPLYAV 340


>SB_142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 716 LPASKWGFEFGFGSWCPLYCKTETNNSCLKVGGGTYVV 603
           LP S+ GF  G G+   ++C  +T   C++     Y V
Sbjct: 78  LPESQCGFRSGRGTMDMIFCLRQTQEKCIEQNMPLYAV 115


>SB_29550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 464

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 716 LPASKWGFEFGFGSWCPLYCKTETNNSCLKVGGGTYVV 603
           LP S+ GF  G G+   ++C  +T   C++     Y V
Sbjct: 78  LPESQCGFRSGRGTMDMIFCLRQTQEKCIEQNMPLYAV 115


>SB_15593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1593

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 46   GTRLRDLNTGASLHTNAPHVLSFR 117
            GTR+++L T ASL T + H L+F+
Sbjct: 1523 GTRMKELVTKASLKTRSRHPLAFQ 1546


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,735,042
Number of Sequences: 59808
Number of extensions: 404808
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)