Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0077
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.4  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   3.2  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   3.2  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.4  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.8  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 257 IS*ITSRAFALEFQNVILFNKQTNKPLNYFVFND 358
           IS I    F LE++ V+  + +  K +  F FND
Sbjct: 361 ISFILVHGFPLEYEYVLAVSNRIQKVIYGFDFND 394


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 296 QNVILFNKQTNKPLNYFVFND*IVAGKNVGRFKIY 400
           QN+    K TN+ +  ++    +++ +   + KIY
Sbjct: 60  QNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIY 94


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = +2

Query: 296 QNVILFNKQTNKPLNYFVFND*IVAGKNVGRFKIY 400
           QN+    K TN+ +  ++    +++ +   + KIY
Sbjct: 43  QNIFKIIKSTNEKITRYIIRMFLISQQKTSKLKIY 77


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 409 NSDVDFKSAHVFTRYNLVIKY 347
           NSD        +T +NL IKY
Sbjct: 283 NSDPRMILTEAYTEFNLTIKY 303


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 671 CPLYCKTETNNS 636
           CPL+CK E   S
Sbjct: 347 CPLHCKPELGQS 358


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -3

Query: 236 ILLRYYSSRVVSH 198
           IL+ YY S++VSH
Sbjct: 225 ILIIYYYSQIVSH 237


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 587 EAHKHQQRKYHHLPS 631
           + H H Q  +HHL S
Sbjct: 139 QRHHHLQNHHHHLQS 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,406
Number of Sequences: 438
Number of extensions: 3982
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)