Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0077
         (784 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04450.1 68416.m00472 myb family transcription factor contain...    29   4.6  
At4g14280.1 68417.m02201 hypothetical protein                          28   8.0  

>At3g04450.1 68416.m00472 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 438

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +1

Query: 139 TIPDVPNTFFKTSIEIVEAL*LTTRLE*YLKRIHKRXKFHK 261
           TI D+ +   KTSIEI EAL L  +++   K++H++ +  +
Sbjct: 309 TIEDIKSLDLKTSIEITEALRLQMKVQ---KQLHEQLEIQR 346


>At4g14280.1 68417.m02201 hypothetical protein
          Length = 798

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 339 TISYLMTKL*RVKTWADLKSTSELYVAFETLADVE 443
           TI+ +   +  VKT+ +L+  +EL   FET A++E
Sbjct: 734 TIAMMKANVETVKTFQNLEMKNELETVFETAAELE 768


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,999
Number of Sequences: 28952
Number of extensions: 283144
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)