Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0076
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    27   2.3  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.1  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    27   4.1  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.4  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   9.5  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    25   9.5  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   9.5  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 179  SLEYENQGKGSIIQNVVNNLIIDGSRTPWSTA 274
            SL + N+G+  I+  +V    I GS+  WS A
Sbjct: 2081 SLNFGNEGRYDILYWIVRACFIQGSQQVWSAA 2112


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -2

Query: 784 NPSVSQNANTVSPKSVPQILTEASKASF 701
           NPS S N N  SPKS+ Q+ T  S+ ++
Sbjct: 2   NPSTSPNRNLASPKSL-QLYTTGSEVAW 28


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 485 LPCGRTTEVLQDPQH*VQPVLETKFD 562
           +PCG  + +  + +H +QP L+  FD
Sbjct: 205 IPCGTVSYIKMEKRHWIQPELQYVFD 230


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
 Frame = +2

Query: 482 SLPCGRTTEVLQDPQH*VQPVLETKFDD*LQHFKTVLYSAPTPPTPP---GEQWVPSSPT 652
           S   G++T+  Q P   +QPV  T++       + V    P PP  P    + + PSSP 
Sbjct: 377 SYQSGQSTQHFQ-PVQPIQPVQSTQYYQPSSPVQPVQNGVPAPPMQPVQSTQYYQPSSPV 435

Query: 653 K 655
           +
Sbjct: 436 Q 436


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 262 MEYCYKLWVGNGQHIVRKYFPY 327
           +EYC +L V  G H++ + + Y
Sbjct: 140 LEYCLRLLVNYGDHVLTEKYTY 161


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 110 NKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSII 217
           N+++  K+    L G Y +A      ++ QGKGS+I
Sbjct: 109 NEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 110 NKELEEKLYNSILTGDYDSAVRQSLE 187
           + +LE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,155,731
Number of Sequences: 5004
Number of extensions: 64127
Number of successful extensions: 219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)