Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0076
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)                      29   3.3  
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_55620| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)                     28   7.7  

>SB_34457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 577 VLQSVVELSFKYWLYLVLWILKYLCCSP 494
           +L  V    F+ WL L+LW++  + CSP
Sbjct: 140 ILARVRRFRFRKWLPLLLWLISLIICSP 167


>SB_31658| Best HMM Match : Arm (HMM E-Value=0.91)
          Length = 249

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 385 LALKLGPTLDPANERLAYGD 444
           +++KL P +DP   RLAYGD
Sbjct: 6   ISVKLPPDIDPTKARLAYGD 25


>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1665

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = -3

Query: 765 MXIRSPRKASHKSLPKLQKHRLYSRIVR*KNRTSFSYFVGLEGTHCSPGGVGGVGAEYNT 586
           M + S ++A  +SL  LQ      R  R   + S    VG  G + SPG  GGV A ++ 
Sbjct: 104 MSLNSGKQAKSQSLVSLQSSGSNRRGDR---KESMPASVGGGGRYISPGDGGGVAAPFDA 160

Query: 585 VLK 577
           +L+
Sbjct: 161 MLE 163


>SB_55620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 604 NTADTTRGAVGSFQPHEVRKRRPVLSSYNSRVQTMLLK 717
           N++DT    VG  +  E  K RP+L   N+ V+T  L+
Sbjct: 14  NSSDTVGDTVGEEEVEEPTKERPLLRRQNAIVKTSSLR 51


>SB_2538| Best HMM Match : YTV (HMM E-Value=0.0015)
          Length = 779

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +2

Query: 110 NKELEEKLYNSILTGDYDSAVRQSLEYENQGKGSIIQNVVNNLIIDGSRTPWSTATSCGS 289
           + E  E+    I   DY++   + ++ E  G  S+ ++  N      +R   +T T C S
Sbjct: 171 SSEKSERYIEKIRKADYENLPDEDVQ-ECAGLDSV-RDSTNTKCFSATRATVATNTKCYS 228

Query: 290 ATDSTLSEST 319
           AT +T++ +T
Sbjct: 229 ATRATMATNT 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,242,149
Number of Sequences: 59808
Number of extensions: 506723
Number of successful extensions: 1901
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1897
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)