Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0076
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical ...    30   2.2  
U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    29   2.9  
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      29   2.9  
U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    29   3.9  
Z75531-9|CAA99802.1|  277|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AY728060-1|AAU43721.1|  277|Caenorhabditis elegans cadmium-induc...    28   8.9  
AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AC024824-2|AAK85502.1|  740|Caenorhabditis elegans Hypothetical
           protein Y55B1BR.2 protein.
          Length = 740

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = +2

Query: 494 GRTTEVLQDPQH*VQPVLETKFDD*LQHFKTVLYSAPTPPTPPGEQWVPSSPTKYENDVL 673
           G+ T+V++  +  V+ V+E       +  K VL   P PP PP    VP+ PT   + +L
Sbjct: 248 GKLTDVVEVEKKVVEKVVE-------KQEKRVLEPLPPPPRPPSVPAVPAVPTPSRDPIL 300


>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 577 LQDRVIFGTNTADTTRGAVGSFQPHEVRKRRPVLSS---YNSRVQTMLLKLR 723
           LQD  I G +T       V   QP  ++KR PVL++   ++  ++ M  K R
Sbjct: 744 LQDTTINGDSTDSKVLHVVVEGQPSRIKKRHPVLTAKFIFDDHIRCMAAKQR 795


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = +1

Query: 577 LQDRVIFGTNTADTTRGAVGSFQPHEVRKRRPVLSS---YNSRVQTMLLKLR 723
           LQD  I G +T       V   QP  ++KR PVL++   ++  ++ M  K R
Sbjct: 737 LQDTTINGDSTDSKVLHVVVEGQPSRIKKRHPVLTAKFIFDDHIRCMAAKQR 788


>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 22/82 (26%), Positives = 32/82 (39%)
 Frame = +2

Query: 419 RTRDLHTAMVRKRTATSSVGSSLPCGRTTEVLQDPQH*VQPVLETKFDD*LQHFKTVLYS 598
           R+RDL   MV  ++AT  + +     RT    +   +  QP+             T    
Sbjct: 57  RSRDLWREMVTVQSATGGIPA-----RTARRTRRDNYGAQPIAANPPSSAAGSCCTCQVG 111

Query: 599 APTPPTPPGEQWVPSSPTKYEN 664
            P PP PPG    P +P +  N
Sbjct: 112 PPGPPGPPGRDGRPGAPGRPGN 133


>Z75531-9|CAA99802.1|  277|Caenorhabditis elegans Hypothetical
           protein K01D12.12 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 586 RVIFGTNTADTTRGAVGSFQPHEV 657
           + +FG+       GA+G F+PHE+
Sbjct: 178 KAVFGSKVYSRCVGAIGDFEPHEL 201


>AY728060-1|AAU43721.1|  277|Caenorhabditis elegans
           cadmium-inducible lysosomal proteinCDR-6 protein.
          Length = 277

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 586 RVIFGTNTADTTRGAVGSFQPHEV 657
           + +FG+       GA+G F+PHE+
Sbjct: 178 KAVFGSKVYSRCVGAIGDFEPHEL 201


>AF078157-2|AAN84818.1|  176|Caenorhabditis elegans Hypothetical
           protein F25E5.8b protein.
          Length = 176

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 79  SDAGADGEHARREHHEKFHYDSCLF 5
           S+ G  G H   EHH K H+   L+
Sbjct: 36  SEEGTSGSHKPEEHHHKEHHGHSLY 60


>AF078157-1|AAG24071.1|  235|Caenorhabditis elegans Hypothetical
           protein F25E5.8a protein.
          Length = 235

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 79  SDAGADGEHARREHHEKFHYDSCLF 5
           S+ G  G H   EHH K H+   L+
Sbjct: 36  SEEGTSGSHKPEEHHHKEHHGHSLY 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,765,641
Number of Sequences: 27780
Number of extensions: 374496
Number of successful extensions: 1355
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)