Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0075
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4)                     29   4.3  
SB_47641| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31)                 28   7.6  
SB_6759| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-05)                  28   7.6  
SB_3881| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 125  AEQERPHRDRGPALLRLERGPPXQASHAHVTTVRFXICH-TPTNTTVRFDT 274
            A QE  +R+R P     E GPP    H+ +TT  +   H  P  T++R  T
Sbjct: 3342 ARQEE-YRERPPICTTHESGPPSMLYHSTLTTGTYLKDHGIPVPTSLRSST 3391


>SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4)
          Length = 770

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +2

Query: 5   PAARERHPGEAAAGRR 52
           PAAR +HPG   AGRR
Sbjct: 227 PAARPKHPGRVEAGRR 242


>SB_47641| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 288 REKRHYVSIGRR*V*TERDASNVASKSF 371
           R KRH+VS  RR + + RDA   A K++
Sbjct: 228 RRKRHFVSCSRRSLASRRDARACAPKAY 255


>SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31)
          Length = 635

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 5   PAARERHPGEAAAGRR 52
           PA R +HPG+  AGRR
Sbjct: 556 PATRPKHPGQVKAGRR 571


>SB_6759| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-05)
          Length = 304

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 591 FARFXMKILTHREHGDSRNVQTKSSTFAAVRQHYDMHAAITIFI 460
           +AR+ ++   +R     RN +T++    A R   +  A IT+FI
Sbjct: 181 YARYELEGFPYRISPQKRNQRTEAGLEKAARSRKEFKAVITVFI 224


>SB_3881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 368

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 5   PAARERHPGEAAAGRR 52
           PA R +HPG+  AGRR
Sbjct: 256 PATRPKHPGQVEAGRR 271


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,262,260
Number of Sequences: 59808
Number of extensions: 236354
Number of successful extensions: 579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)