Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0074
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    29   0.94 
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    28   1.6  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    28   1.6  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    26   5.0  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.6  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    26   6.6  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   8.8  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    25   8.8  

>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +3

Query: 525 ENSHKISFYTDGFRLQVTSSTIQHRFSSVKSSFLSEKNTIGALSYVLQ 668
           EN   IS   D  RL  ++ T     SSV+ + ++E + + ++SYVLQ
Sbjct: 160 ENESSISIAHDSSRLNRSTET-----SSVQHTLITEADLLSSISYVLQ 202


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 573 VTSSTIQHRFSSVKSSFLSEKNTIGALSYVLQARA----HIPSGLXTQSGAIWSFQTISS 740
           VTSST   +FSS+ SS LS +N   A S +    A      PS     S +  S QT SS
Sbjct: 499 VTSSTSFTKFSSLSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTSSS 558


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 620 FPIRKKYHWRSLVRTTSKGTHSIRSXHTKRRNLVLPNNFQRWTVR 754
           F I+KK   + L RT  + T  +    T+ R L + NN+ +  +R
Sbjct: 281 FRIKKKLKEQQLERTAKELTEKVAILETRVRELEMENNWLKGLIR 325


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 82  IVYKTHYVYCIKKNNERKINYED 14
           I++ + ++Y I+K N + ++YED
Sbjct: 235 IIFPSIWIYAIEKKNFKNLSYED 257


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +3

Query: 576 TSSTIQHRFSSVKSSFLSEKNTIGALSYVLQARAHIPSGLXTQSGAIWSFQTISS 740
           TSS+  H  SS  SS ++  ++ G  S  L   + +PS   +   +  +   +SS
Sbjct: 115 TSSSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSS 169


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 430 PNS-LKHSHSYQ*ILTSHIRSV*SLSHNPSHNTKTLTK 540
           PN  +K   SYQ +L SH+ +   ++H  SH  ++L +
Sbjct: 460 PNQPVKVRVSYQKLLKSHVMNKLHMAHPKSHTNRSLLR 497


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 218 ATLNKFRDAPHPDYKL*Q-SNVFNCFYNYLNYLHKTMVQYNFL 343
           A LNKF    +P+Y L + SNVFNC    L Y+    +  N +
Sbjct: 259 ARLNKFS---YPNYVLSRTSNVFNCRAQCLEYVEVLELSKNLV 298


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 79  VYKTHYVYCIKKNNERKINYEDYYTI 2
           +Y+   +Y   K N  ++NY++ YT+
Sbjct: 662 IYENKIIYFDWKKNRWEVNYDEMYTL 687


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +1

Query: 547 FIRTALDYKSRPLQYSTGSVP*NHLSYQKKIPLALSRTYYKQGHTFHQVSA 699
           F++T    +   L Y   S+    LS+Q+K  + L + +  + HT   +S+
Sbjct: 68  FLQTYGKQEKNLLAYFKASIRIKSLSHQRKAAVELQKNFPSRKHTLWVISS 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,420
Number of Sequences: 5004
Number of extensions: 62133
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)