Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0074
         (754 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)              25   1.2  
SB_13075| Best HMM Match : 7tm_1 (HMM E-Value=4e-07)                   29   4.1  
SB_47586| Best HMM Match : NAD_binding_3 (HMM E-Value=2)               28   7.1  
SB_53489| Best HMM Match : Pox_F15 (HMM E-Value=3.2)                   28   9.4  

>SB_43520| Best HMM Match : RNase_PH (HMM E-Value=0.00011)
          Length = 972

 Score = 25.0 bits (52), Expect(3) = 1.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 376 YVYCFCYHC 350
           Y YC+CY+C
Sbjct: 491 YCYCYCYYC 499



 Score = 21.8 bits (44), Expect(3) = 1.2
 Identities = 6/17 (35%), Positives = 9/17 (52%)
 Frame = -1

Query: 370 YCFCYHCVLQEIVLYHC 320
           YC+CY+        Y+C
Sbjct: 502 YCYCYYYYHHYYCCYYC 518



 Score = 20.6 bits (41), Expect(3) = 1.2
 Identities = 6/13 (46%), Positives = 7/13 (53%)
 Frame = -1

Query: 394 TKAIPTYVYCFCY 356
           T   P   YC+CY
Sbjct: 461 TTTAPVLRYCYCY 473


>SB_13075| Best HMM Match : 7tm_1 (HMM E-Value=4e-07)
          Length = 311

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 4   WYNNPHNLFFFHCFFLYNTRNAFYKQYCY 90
           W+ NPH  +FF  FFL N+ N+F+    Y
Sbjct: 221 WWQNPH--YFFFLFFLENS-NSFWNVLVY 246


>SB_47586| Best HMM Match : NAD_binding_3 (HMM E-Value=2)
          Length = 295

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 138 IKKQLY*NILYFYEFNVTILFIKRITC 58
           +KKQ + +   FY+F+   LFI+R +C
Sbjct: 171 LKKQQHLHFSSFYQFSYMFLFIRRYSC 197


>SB_53489| Best HMM Match : Pox_F15 (HMM E-Value=3.2)
          Length = 372

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 619 LSYQKKIPLALSRTYYKQGHTFHQVSAHKAAQFGPSKQFP 738
           L Y K  P  +S+   ++   F+QV  H  + FG S  FP
Sbjct: 258 LEYWKIPPAFMSQPDTRERIWFNQVHLHSMSSFGESPMFP 297


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,005,348
Number of Sequences: 59808
Number of extensions: 449099
Number of successful extensions: 926
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)