Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0074
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.76 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   1.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   1.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +3

Query: 648  ALSYVLQARAHIP--SGLXTQSGAIWSFQTISSGGR 749
            A SYV+  R H+P  S   T     WS   + S GR
Sbjct: 1188 AKSYVVDVRVHVPGESESETVLTLAWSESNVESKGR 1223


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = -1

Query: 88  NNIVYKTHYVYCIKKNNERKINYED--YYTI 2
           NN ++  +Y Y    NN    NY    YY I
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLYYNI 116


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
 Frame = -1

Query: 88  NNIVYKTHYVYCIKKNNERKINYED--YYTI 2
           NN ++  +Y Y    NN    NY    YY I
Sbjct: 86  NNTIHNNNYKYNYNNNNYNNNNYNKKLYYNI 116


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = -1

Query: 685 GMCALACSTYERAPMVFF----SDRKDDFTELNRCCIVEDVTCNLKPSV*KLIL 536
           G+ A+  S   R+PMV F    SD KD          +ED+T   K    K+IL
Sbjct: 63  GITAIWLSPINRSPMVDFGYDISDFKDVDPIFGTIKDLEDLTAEAKKQNLKVIL 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,620
Number of Sequences: 438
Number of extensions: 4834
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)