Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0073
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    75   1e-14
SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr 2...    58   2e-09
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    52   8e-08
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    50   2e-07
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    33   0.030
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    26   4.6  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   6.1  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   8.1  

>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 34/78 (43%), Positives = 45/78 (57%)
 Frame = +1

Query: 16  MTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQKIYFRGEG 195
           M ++    CP C G GET  +           V+++ KIL VH+EKGM + QKI F+ EG
Sbjct: 171 MIQRMQMTCPDCNGAGETIRDEDRCKECDGAKVISQRKILTVHVEKGMHNGQKIVFKEEG 230

Query: 196 DQQPDTEPGDVIIVLQQK 249
           +Q P   PGDVI V+ QK
Sbjct: 231 EQAPGIIPGDVIFVIDQK 248



 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/90 (38%), Positives = 55/90 (61%)
 Frame = +3

Query: 231 YCVTTKTSEKFKRNGDNLIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDV 410
           + +  K   +FKR+GD+L  +  + L  AL G + V +HLD R L I  +PGE I+P ++
Sbjct: 243 FVIDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGECIRPNEL 302

Query: 411 KCVQGEGMPIYKNLFEKGNFYVKFDVVFPE 500
           K + G+GM + +   + GN Y++F V FPE
Sbjct: 303 KVLPGQGM-LSQRHHQPGNLYIRFHVDFPE 331


>SPBC405.06 |||DNAJ protein Xdj1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +3

Query: 261 FKRNGDNLIMKHEITLTEALCGFE-FVAKHLDGRDLLIRHLPGEVIKPGDVKCVQGEGMP 437
           F+R GD+L  K +I+L EAL GF   +   LDGR L      G+++ PGD   + GEGM 
Sbjct: 265 FERLGDDLKAKLKISLAEALTGFNRVILTTLDGRGLEYVQPIGKILHPGDCLIIPGEGMY 324

Query: 438 IYKNLFEKGNFYVKFDVVFPENHLL 512
                  +G+ Y++ D+ FP++ L+
Sbjct: 325 KDSKTDLRGDLYLEVDIEFPKDGLI 349



 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = +1

Query: 40  CPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQKIYFRGEGDQQPDTEP 219
           C +C G+G +F              + E ++L   + +  ++N KI  RG  D+     P
Sbjct: 191 CDTCNGKGVSFRGKDRCKHCKGSGTVPEQRMLSFFVNRSAKENDKIIQRGMADEAYGITP 250

Query: 220 GDVIIVLQQKP 252
           GDVI+ L QKP
Sbjct: 251 GDVILQLHQKP 261


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 52.0 bits (119), Expect = 8e-08
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
 Frame = +3

Query: 231 YCVTTKTSEKFKRNGDNLIMKHEITLTEALCGFEFVAKHLDGRDLLI-RHLPGEVIKPGD 407
           + +  K    F R+GD+L M+ E++L EAL GF      +DG+ L +   LP    +PG 
Sbjct: 279 FVLAEKPHPVFTRSGDDLRMQVELSLKEALLGFSKQISTIDGKKLKVSSSLP---TQPGY 335

Query: 408 VKCVQGEGMPIYKNLFEKGNFYVKFDVVFP 497
                G GMP+ KN  ++GN  ++  V FP
Sbjct: 336 EITYPGFGMPLPKNPSQRGNMIIECKVKFP 365



 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 18/42 (42%), Positives = 27/42 (64%)
 Frame = +1

Query: 127 KILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDVIIVLQQKP 252
           +ILE+ ++ G +   KI F GEGD++PD    D+  VL +KP
Sbjct: 244 RILEIKVKPGWKAGTKIKFAGEGDEKPDGTVQDIQFVLAEKP 285


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 50.4 bits (115), Expect = 2e-07
 Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 6/84 (7%)
 Frame = +3

Query: 267 RNGDNLIMKHEITLTEALCG-FEFVAKHLDGRDLLIRHLPGEVIKPGDVKCVQGEGMPIY 443
           R  ++L  K  I++ EAL G ++   + LDG  + ++   GEV+ PG+ + V+ +GMPIY
Sbjct: 274 RKDNDLYRKETISVREALLGNWKRKIQKLDGSFMEVKRSAGEVVHPGETERVKNQGMPIY 333

Query: 444 -----KNLFEKGNFYVKFDVVFPE 500
                K     G+ Y++++V FP+
Sbjct: 334 NLHKGKTTSAHGSAYIEWEVKFPK 357



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = +1

Query: 22  RQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQKIYFRGEGDQ 201
           +Q    C +C G G T               + E+   ++ +  G  +  +I FRG+ D+
Sbjct: 193 QQMRMPCNACNGNGRTIKHKCPRCKGERVAEVVES--FDIKVPAGAPEGYRIGFRGKADE 250

Query: 202 QPDTEPGDVIIVLQ 243
            P  E GD+I++L+
Sbjct: 251 IPGMEAGDIIVILE 264


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 33.5 bits (73), Expect = 0.030
 Identities = 26/80 (32%), Positives = 37/80 (46%)
 Frame = +3

Query: 261 FKRNGDNLIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDVKCVQGEGMPI 440
           F R G N+    +I +T A  G       L G ++ +R  PG     GD   + G+G+  
Sbjct: 362 FVREGTNVTYNAKIPMTTAALGGTLRVPTLTG-NVDLRVSPGT--STGDRITMAGKGIRK 418

Query: 441 YKNLFEKGNFYVKFDVVFPE 500
             N    GNFYV F+V  P+
Sbjct: 419 V-NTSRYGNFYVNFEVTIPK 437


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = -3

Query: 373 LMSKSLPSKCLATNSKPHNASVSVISCFIIKLSPFLLNFSEVFVVTQ*SHHQVQYQ 206
           ++ ++  + CL     P    +   S F   L+ F+  FSE+ + TQ  H   Q Q
Sbjct: 515 IVFRACSTVCLIDKLPPKKVDIPFKSDFENALNGFVATFSEMLIQTQCWHLSAQTQ 570


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 676 SXIITSIGFFSASATSTRCENNPIRLTS--STSSPVGITKSRTWGQNSFY 533
           S II++    SAS ++    +     TS  STS+  G + S  WG++SFY
Sbjct: 223 SSIISAAPPDSASESTPASTSYASSTTSATSTSTTSGSSGSSDWGRSSFY 272


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 537 KLFCPHVLLFVMPTGEDVEEVNLMGLFSHLVEVAEAEKKPMLVMMXDTCTLGPW 698
           K   P VL  +  TG+  E++N + L   LVEVA ++    L  +    +   W
Sbjct: 132 KAIVPSVLESIHTTGKWNEKMNSLQLLDVLVEVAPSQLSYSLPQIIPVVSESMW 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,616,843
Number of Sequences: 5004
Number of extensions: 51083
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)