Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0073
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)                 113   1e-25
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              97   1e-20
SB_55431| Best HMM Match : DnaJ_C (HMM E-Value=7.2e-13)                66   3e-11
SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)              62   6e-10
SB_39063| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)                  44   9e-05
SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)                    42   4e-04
SB_19319| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   9e-04
SB_7656| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.70 
SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)           29   3.7  
SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)                    28   6.5  

>SB_34890| Best HMM Match : DnaJ (HMM E-Value=2.7e-37)
          Length = 386

 Score =  113 bits (272), Expect = 1e-25
 Identities = 51/105 (48%), Positives = 67/105 (63%)
 Frame = +3

Query: 237 VTTKTSEKFKRNGDNLIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDVKC 416
           +  K  + F R G +L M   +TL EALCGF  V KHLDGRDLLIR+  G +I+PG ++ 
Sbjct: 228 IQQKDHDLFSRQGMDLFMTKTVTLAEALCGFHMVVKHLDGRDLLIRYHAGNIIEPGCIRG 287

Query: 417 VQGEGMPIYKNLFEKGNFYVKFDVVFPENHLLMRNS*NQ*KLFCP 551
           + GEGMP Y++ F+KGN Y+KFD+ FP N  L      Q + F P
Sbjct: 288 IVGEGMPAYRHPFDKGNLYIKFDIEFPPNGFLPEEKLKQLETFLP 332



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 35/78 (44%), Positives = 45/78 (57%)
 Frame = +1

Query: 16  MTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQKIYFRGEG 195
           M +Q  S C  C G+ +   E             N     +VH++KGM D QKI FRGEG
Sbjct: 157 MVQQMQSMCHDCSGEDDDGKENIRLAIPNGGDAFNT---FQVHVDKGMSDGQKITFRGEG 213

Query: 196 DQQPDTEPGDVIIVLQQK 249
           DQ+P+ EPGDVI+V+QQK
Sbjct: 214 DQEPNVEPGDVILVIQQK 231


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 1/111 (0%)
 Frame = +3

Query: 261 FKRNGDNLIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDVKCVQGEGMPI 440
           F+R G +LI++ EI L E+LCGF+     LD R LL+   PG VIKPGD+K ++ EGMP 
Sbjct: 311 FRRRGADLIIQMEIDLVESLCGFQKTITTLDKRTLLVTSKPGNVIKPGDMKSIEDEGMPH 370

Query: 441 YKNLFEKGNFYVKFDVVFPENHLL-MRNS*NQ*KLFCPHVLLFVMPTGEDV 590
           ++N F KG   ++FDV FPEN +L  +N     KL  P   + +    EDV
Sbjct: 371 HRNPFHKGRLLIQFDVKFPENGVLNPKNMDKLEKLLPPRPEIIIPDETEDV 421



 Score = 81.0 bits (191), Expect = 9e-16
 Identities = 41/90 (45%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
 Frame = +1

Query: 16  MTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQKIYFRGEG 195
           M +Q  + C  C G+GE   E           V+ E KILEVHI+KGM+D QK  F GEG
Sbjct: 229 MVQQIQTVCRDCGGKGEKIPEKDRCKNCHGKKVVRERKILEVHIDKGMKDGQKRTFSGEG 288

Query: 196 DQQPDTEPGDVIIVL--QQKPQKSLRGTEI 279
           DQ P  EPGD++IVL  Q+ P    RG ++
Sbjct: 289 DQDPGIEPGDIVIVLDEQEHPVFRRRGADL 318


>SB_55431| Best HMM Match : DnaJ_C (HMM E-Value=7.2e-13)
          Length = 278

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 37/92 (40%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
 Frame = +3

Query: 231 YCVTTKTSEKFKRNGDN-LIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGD 407
           + +  K  + FKR+ +N LI   ++TL +AL G       +DGR L I+    EVI+PG 
Sbjct: 175 FIIADKPHQFFKRDSENNLIYVSKLTLKDALVGCVIQVPTIDGRVLSIQ--VNEVIRPGM 232

Query: 408 VKCVQGEGMPIYKNLFEKGNFYVKFDVVFPEN 503
            K +QGEG+P+ KN  E+ +  V F+V FP N
Sbjct: 233 QKRIQGEGLPLSKNPIERADLIVTFEVEFPTN 264



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 115 LNETKILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDVIIVLQQKPQK 258
           + E KIL++ ++ G +   KI F  EGD +P     D+I ++  KP +
Sbjct: 136 IREDKILQIEVKPGWKAGTKITFPREGDMKPGIIASDIIFIIADKPHQ 183


>SB_21966| Best HMM Match : DnaJ (HMM E-Value=5.30001e-40)
          Length = 351

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
 Frame = +3

Query: 237 VTTKTSEKFKRNGDN-LIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDVK 413
           +  K  + F R+GDN L+ K +I+L +AL G       L GR + + +   +VI+PG  K
Sbjct: 249 IKDKPHKHFTRDGDNNLVYKAKISLRDALGGTTISVPTLSGRTVQVHN--ADVIQPGSSK 306

Query: 414 CVQGEGMPIYKNLFEKGNFYVKFDVVFPEN 503
            + GEG+P+ K+   KG+  +K+DV  P N
Sbjct: 307 RIVGEGLPMPKDNSRKGDLIIKYDVYLPNN 336



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +1

Query: 121 ETKILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDVIIVLQQKPQK 258
           E KIL V+++ G ++  KI F  EGD++P   P DV+  ++ KP K
Sbjct: 210 EEKILTVNVKPGWKEGTKITFPKEGDRKPGVIPADVVFKIKDKPHK 255


>SB_39063| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 29/92 (31%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
 Frame = +3

Query: 231 YCVTTKTSEKFKRNGDNLIMKH-EITLTEALCGFEF-VAKHLDGRDLLIRHLP-GEVIKP 401
           + +  K  E F R+ DN I+   +I+L +AL G+   +   +   D  + ++P  +++KP
Sbjct: 242 FTIKDKKHEHFTRDNDNNILYTVKISLRDALTGYSSNITVPVPTLDHRVVNVPLNDIVKP 301

Query: 402 GDVKCVQGEGMPIYKNLFEKGNFYVKFDVVFP 497
           G  K ++GEG+P+ K   ++ +  V F+VVFP
Sbjct: 302 GSKKRIKGEGLPLPKIPGQRMDMLVTFEVVFP 333



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 17/44 (38%), Positives = 28/44 (63%)
 Frame = +1

Query: 118 NETKILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDVIIVLQQK 249
           +E KIL V+++KG +   +I F  EGDQ+P   P D++  ++ K
Sbjct: 204 SEEKILTVNVKKGWKAGTRITFPKEGDQKPGRIPADIVFTIKDK 247


>SB_43852| Best HMM Match : DnaJ (HMM E-Value=1.7e-37)
          Length = 399

 Score = 44.4 bits (100), Expect = 9e-05
 Identities = 17/42 (40%), Positives = 29/42 (69%)
 Frame = +1

Query: 127 KILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDVIIVLQQKP 252
           KIL +++++G R + KI F  EGDQ P+  P D++ +++ KP
Sbjct: 188 KILTINVKRGWRASTKITFPKEGDQGPNNIPADIVFIVKDKP 229


>SB_293| Best HMM Match : DnaJ (HMM E-Value=7.6e-37)
          Length = 238

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 28/79 (35%), Positives = 40/79 (50%)
 Frame = +3

Query: 273 GDNLIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDVKCVQGEGMPIYKNL 452
           G +L +  E+TL E   G  F+  H+    +     PG  IK       +GEGMP Y+N 
Sbjct: 132 GSDLTVDLEVTLEELYNG-NFIEVHVVREKIT---WPGARIKK------KGEGMPSYENN 181

Query: 453 FEKGNFYVKFDVVFPENHL 509
            ++G+ Y+ FDV FP   L
Sbjct: 182 HDRGDLYITFDVEFPRGSL 200


>SB_19319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
 Frame = +1

Query: 115 LNETKILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDV---IIVLQQK 249
           +N+ KILEV +E+GM+  Q+  F  EG+   D EPGD+   II L+ K
Sbjct: 23  VNKEKILEVEVEQGMKHEQEYPFVSEGEPHIDGEPGDLKFKIIELRHK 70



 Score = 31.9 bits (69), Expect = 0.53
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 255 EKFKRNGDNLIMKHEITLTEALCGFEFVAKHLD 353
           ++F R G +L     ITL +AL GFE    HLD
Sbjct: 70  KRFTRKGKDLYANVTITLNDALSGFEMDIPHLD 102


>SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
 Frame = +3

Query: 237 VTTKTSEKFKRNGDN-LIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDVK 413
           +  K    F R+ DN LI K  ++L  AL G       L G  + + +    +I+PG V+
Sbjct: 241 IKDKPHRHFTRDKDNNLIYKATVSLRTALGGMNIHVPSLCGEVIDLENKG--IIQPGMVR 298

Query: 414 CVQGEGMPIYKNLFEKGNFYVKFD 485
            ++GEG+PI  N   + +  V+FD
Sbjct: 299 TIKGEGLPIPGNPSVRADMIVEFD 322



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +1

Query: 121 ETKILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDVIIVLQQKPQK 258
           E K L V+I+ G +   +I F  EGD++P  +P D++  ++ KP +
Sbjct: 202 EEKTLIVNIKPGWKQGTRIVFPREGDRRPGKDPSDIVFKIKDKPHR 247


>SB_7656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 26

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 408 VKCVQGEGMPIYKNLFEKGNFYVKFD 485
           +K ++ EGMP ++N F KG   ++FD
Sbjct: 1   MKSIEDEGMPHHRNPFHKGRLLIQFD 26


>SB_48559| Best HMM Match : Peptidase_A17 (HMM E-Value=2e-38)
          Length = 1541

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
 Frame = +3

Query: 219  W*CDYCVTTKTSEKFKRNGDNL-----IMKHEITLTEALCGFEFVAKHLDGRDLLIRHLP 383
            W  +YC   ++ +K+ +   NL     ++  +  L         ++K    +D L+R + 
Sbjct: 1278 WRREYCTQLQSRQKWNKPQPNLREGDVVLMTDPDLPRNQWPLAIISKVFPSKDNLVRKVQ 1337

Query: 384  GEVIKPGDVKCVQGEGMPIYKNLFEKGNFYV 476
                K G  KC +   +   +  +E G+FY+
Sbjct: 1338 VTTAKDGQHKCFERPEVTELRIDWENGHFYM 1368


>SB_27983| Best HMM Match : PAN (HMM E-Value=0.0022)
          Length = 616

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 391 TSPGKCLMSKSLPSKCLATNSKPHN 317
           TSP +C     L S+CL+ N KPH+
Sbjct: 185 TSPVECEQLCFLDSRCLSINFKPHS 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,352,830
Number of Sequences: 59808
Number of extensions: 368941
Number of successful extensions: 882
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)