Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0073
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain (...    93   1e-19
Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical pr...    93   2e-19
Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical pr...    59   3e-09
Z47356-7|CAD31695.1|  249|Caenorhabditis elegans Hypothetical pr...    36   0.038
Z47356-1|CAA87414.2|   82|Caenorhabditis elegans Hypothetical pr...    33   0.15 
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine re...    28   7.6  
AF077541-1|AAL77189.1|  803|Caenorhabditis elegans Alpha-catulin...    28   7.6  
AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pomb...    28   7.6  

>AF016428-7|AAB65361.1|  439|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 19 protein.
          Length = 439

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 43/92 (46%), Positives = 62/92 (67%)
 Frame = +3

Query: 237 VTTKTSEKFKRNGDNLIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDVKC 416
           +  K  + FKR+GD+L M  +++L EALCG+ F+ KHLDG  L++    G+VIKPG ++ 
Sbjct: 279 IQQKDHDIFKRDGDDLHMTKKLSLNEALCGYNFLIKHLDGHPLVLSSKQGDVIKPGVIRG 338

Query: 417 VQGEGMPIYKNLFEKGNFYVKFDVVFPENHLL 512
           V G+GMP  K    KGN +V+F+V FP+ H L
Sbjct: 339 VLGKGMPNKKYPELKGNLFVEFEVEFPKEHFL 370



 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = +1

Query: 16  MTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQKIYFRGEG 195
           M +Q    C +C G G                  N +KILEVH+  GM+ N KI F+G+G
Sbjct: 204 MLQQMQVHCDACKGSGGKVPAGDKCKGCHGEKYENVSKILEVHVLPGMKHNDKITFKGDG 263

Query: 196 DQ-QPDTEPGDVIIVLQQK 249
           DQ  PD EPGDV+IV+QQK
Sbjct: 264 DQSDPDGEPGDVVIVIQQK 282


>Z92834-5|CAB07390.1|  402|Caenorhabditis elegans Hypothetical
           protein F39B2.10 protein.
          Length = 402

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 44/82 (53%), Positives = 55/82 (67%)
 Frame = +3

Query: 255 EKFKRNGDNLIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDVKCVQGEGM 434
           EKF R GDNLI++H I L+EALCGF      LDGR +  R LPGEVI   DVK +  EGM
Sbjct: 251 EKFVRKGDNLIIQHNIDLSEALCGFVRTISTLDGRTIFYRVLPGEVIAHADVKVIHNEGM 310

Query: 435 PIYKNLFEKGNFYVKFDVVFPE 500
           P+ +   +KG+  V+FDV FP+
Sbjct: 311 PMRRASSDKGDLLVQFDVKFPD 332



 Score = 60.9 bits (141), Expect = 9e-10
 Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +1

Query: 16  MTRQFHSRCPSCLGQGETFNEXXXXXXXXXXXVLNETKILEVHIEKGMRDNQKIYFRGEG 195
           M +Q  S C SC G+G TF E            + E +I+EV I  GM+D +K  F G+G
Sbjct: 170 MVQQMQSHCDSCNGEGSTFLEKDRCKKCNGKKQVKEDEIIEVGITPGMKDGEKFVFEGKG 229

Query: 196 DQQPDTE-PGDVIIVLQQ 246
           D+    E PGD ++VL +
Sbjct: 230 DEVIGIEKPGDFVVVLDE 247


>Z66513-5|CAA91334.1|  331|Caenorhabditis elegans Hypothetical
           protein F54D5.8 protein.
          Length = 331

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 30/89 (33%), Positives = 50/89 (56%)
 Frame = +3

Query: 231 YCVTTKTSEKFKRNGDNLIMKHEITLTEALCGFEFVAKHLDGRDLLIRHLPGEVIKPGDV 410
           + +  K   KFKR G ++    +I+L  AL G + +   LDG D  ++    +VIKPG  
Sbjct: 230 FVIKDKPHPKFKREGSDIKRVEKISLKSALTGLDIMIPTLDGADYRLQL--NDVIKPGTT 287

Query: 411 KCVQGEGMPIYKNLFEKGNFYVKFDVVFP 497
           + + G+G+P  K+   +G+  ++FDV FP
Sbjct: 288 RRLTGKGLPNPKSPSHRGDLIIEFDVEFP 316



 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +1

Query: 121 ETKILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDVIIVLQQKPQKSLR 267
           E K+L V I+ G +   KI F  EGDQ P+  P D++ V++ KP    +
Sbjct: 193 EDKVLTVTIKPGWKSGTKITFPKEGDQHPNRTPADIVFVIKDKPHPKFK 241


>Z47356-7|CAD31695.1|  249|Caenorhabditis elegans Hypothetical
           protein T15H9.7 protein.
          Length = 249

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 112 VLNETKILEVHIEKGMRDNQKIYFRGEGDQQPDTEPGDV 228
           ++ E K+LEV +E G  +  +  F GEG+   + +PGD+
Sbjct: 200 LVQENKVLEVEVEVGADNGHQQIFHGEGEPHIEGDPGDL 238


>Z47356-1|CAA87414.2|   82|Caenorhabditis elegans Hypothetical
           protein T15H9.1 protein.
          Length = 82

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = +3

Query: 342 KHLDGRDLLIRHLPGEVIKPGDVKCVQGEGMPIYKNLFEKGNFYVKFDVVFPENHL 509
           +HLDG  + ++    +V  PG     + EGMP  ++  +KG   V FDV FP+  L
Sbjct: 4   QHLDGHIVKVQR--DKVTWPGARLRKKDEGMPSLEDNNKKGMLVVTFDVEFPKTEL 57


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -2

Query: 167 LSLIPFSMCTSKIFVSFKTFFPLHLEHLSFSLNVSP 60
           + LI +S+C   + VS K F  + + HL+F + V+P
Sbjct: 35  IELILYSICLYIVVVSLKIFVQVRMFHLNFIILVAP 70


>AF101305-3|AAF98595.1|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 1 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
 Frame = -3

Query: 301 ISCFIIKLSPFLLNFSEVFVVT-Q*SHHQVQYQAAGLL 191
           IS F+++++PF+L  +E FV T +  H++ +Y+  G+L
Sbjct: 108 ISAFVVEVTPFVLT-AERFVATFRARHYENRYKWCGVL 144


>AF077541-1|AAL77189.1|  803|Caenorhabditis elegans Alpha-catulin
           (catenin/vinculinrelated) protein 1, isoform a protein.
          Length = 803

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 128 FVSFKTFFPLHLEHLSFSLNVSP*PRQ 48
           F  F TF PL L HLS S ++ P PR+
Sbjct: 775 FSFFATFLPLSLSHLSMSYHL-PKPRE 800


>AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform a protein.
          Length = 741

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 426 EGMPIYKNLFEK--GNFYVKFDVVFPENH 506
           E   I+  +F K  GNF ++F   FP+NH
Sbjct: 702 EHFSIFSRIFRKKIGNFSIQFSKKFPKNH 730


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,757,440
Number of Sequences: 27780
Number of extensions: 301975
Number of successful extensions: 689
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)