Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0073
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   3.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   3.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   3.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   3.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.0  
M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 270 NGDNLIMKHEIT-LTEALCGFEFVAKHLDGRDLLIR 374
           + D++++  E +  TEA+   EF+A+HL   DL I+
Sbjct: 434 SSDSVLLSPEASKATEAV---EFIAEHLRNEDLYIQ 466



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 167 LSLIPFSMCTSKIFVSFKTFFPLHLEHLSFS 75
           LSL+ F +  SKI        PL  ++L F+
Sbjct: 273 LSLVVFLLLVSKILPPTSLVLPLIAKYLLFT 303


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 430 PSPCTHLTSPG 398
           P+PCTH T+ G
Sbjct: 432 PNPCTHTTTNG 442


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 430 PSPCTHLTSPG 398
           P+PCTH T+ G
Sbjct: 418 PNPCTHTTTNG 428


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 430 PSPCTHLTSPG 398
           P+PCTH T+ G
Sbjct: 452 PNPCTHTTTNG 462


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 430 PSPCTHLTSPG 398
           P+PCTH T+ G
Sbjct: 401 PNPCTHTTTNG 411


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 352 SKCLATNSKPHNASVSVISCFI 287
           +KC ATN + +      +SC +
Sbjct: 563 TKCKATNEETYRGGKGALSCLL 584


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 352 SKCLATNSKPHNASVSVISCFI 287
           +KC ATN + +      +SC +
Sbjct: 563 TKCKATNEETYRGGKGALSCLL 584


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -3

Query: 352 SKCLATNSKPHNASVSVISCFI 287
           +KC ATN + +      +SC +
Sbjct: 563 TKCKATNEETYRGGKGALSCLL 584


>M29492-1|AAA27727.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H40. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 338 NKFKTTQCFSKCD 300
           NKFKTT+  S C+
Sbjct: 25  NKFKTTRYLSVCE 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,947
Number of Sequences: 438
Number of extensions: 3453
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)