Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0071
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       47   2e-06
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        43   4e-05
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    41   1e-04
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    38   0.001
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   1.6  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    27   1.6  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    27   2.8  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    27   2.8  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   3.7  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   4.8  
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1...    26   4.8  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   6.4  
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ...    25   6.4  
SPAC17A5.18c |rec25|mug19|meiotic recombination protein Rec25|Sc...    25   6.4  

>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
 Frame = +1

Query: 259 CVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTV--VQDKVLSLIQCWADAF----QNQ 420
           CVKNCG  F + + +KEF++ELV+   P+  P  +  +Q  +LSLI+ W        + +
Sbjct: 72  CVKNCGYAFRLQIASKEFLNELVRRF-PERPPSRLNKIQVMILSLIEEWRKTICRVDRYK 130

Query: 421 AELQGVGQVYNELRTKGVEFPMTDLDAMGPIFTPQRSV 534
            +L  +  ++  L  KG  FP  D + +  +   Q+SV
Sbjct: 131 EDLGFIRDMHRLLSYKGYTFPEIDKENLAVL--SQKSV 166


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
 Frame = +1

Query: 259 CVKNCGKPFHVLVCNKEFISELVKLIGPKNDP---PTVVQDKVLSLIQCWADAF-QNQAE 426
           CVKNCG PFH  + ++EF++  V      N P      +Q K+L +++ W     +N   
Sbjct: 71  CVKNCGYPFHFQIASEEFLNGFVSRF--PNHPISRMNKIQSKMLEMLEEWNYMLCKNNRH 128

Query: 427 LQGVGQVYN--ELRT-KGVEFPMTDLDAMGPIFTPQRSV 534
            +   ++++  EL   +G +FP  D D++  +  P  S+
Sbjct: 129 REDFSRIHDIRELMAFRGYKFPAVDEDSIA-VMKPNNSL 166



 Score = 33.9 bits (74), Expect = 0.018
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = +2

Query: 53  STPVGQKIEQATDGALPSENWALNMEICDIINSST-DGPKDAIKAIRKRLTTSAGKNYTV 229
           S  + + I++ATD      N ALN+EI D+IN    + P++A   I KR+ ++   N TV
Sbjct: 4   SQTLSKYIDKATDQFNLEPNLALNIEIADLINEKKGNTPREAALLILKRVNSA---NPTV 60

Query: 230 VMYTLTVLE 256
               L +L+
Sbjct: 61  SYLALHLLD 69


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 41.1 bits (92), Expect = 1e-04
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +1

Query: 256 TCVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAF-QNQAELQ 432
           TCVKN G  F + + ++EF+  LV ++         V+  +L  IQ WA A     + L 
Sbjct: 75  TCVKNGGSGFLLEIASREFMDNLVSILRSPAGIDEDVKMVILRYIQSWALAVPDTNSPLS 134

Query: 433 GVGQVYNELRTKGVEFP 483
            +  VY  L+    EFP
Sbjct: 135 YIIHVYQNLKDGDYEFP 151


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +2

Query: 74  IEQATDGALPSENWALNMEICDIINS-STDGPKDAIKAIRKRLTTSAGKNYTVVMYTLT 247
           I QATD     E W + M+ CD ++S S D  +++IK + KRL T A  N  ++  TLT
Sbjct: 13  ILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDT-ANANIQLLALTLT 70


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/24 (62%), Positives = 16/24 (66%)
 Frame = +3

Query: 33  HVIGTPFLRRWVKKLNKPQMAHYH 104
           HV G P  RRW  KLN PQMA+ H
Sbjct: 238 HVNG-PTYRRW--KLNLPQMANLH 258


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/51 (25%), Positives = 28/51 (54%)
 Frame = +2

Query: 56  TPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTS 208
           T V   I++ T      E+ +  +++ + +N +  GP++A + +RK+L  S
Sbjct: 11  TAVTTYIDRLTSRDTDDEDLSGIVQLSEAVNLTVTGPREASRTLRKKLKYS 61


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = -3

Query: 402 GPTLDEAQYFVLHHRRRIIFGANQFYQL*YKFLIADENMERLSTVFYACSRTVSVYITTV 223
           GP +D+    + H RR ++F A    ++  K   A  +      V    S TV   I   
Sbjct: 207 GPIIDKILKIIPHERRTLLFSATMTSKV-EKLQRASLHQPVRVAVSSKFS-TVDTLIQRY 264

Query: 222 *FFPALVVNLFLIALMASL-GPSVLLF 145
            FFP    + +L+ L+  L G S+++F
Sbjct: 265 LFFPFKHKDTYLVYLVNELAGNSIIIF 291


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = +1

Query: 349 DPPTVVQDKVLSLIQCWADAFQNQAE--LQGVGQ 444
           DPP V++    +  +CW D F   A   L+ +G+
Sbjct: 130 DPPDVIKPNPAAKYECWIDPFSLPASKALEAIGK 163


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 423 SLVLEGIGPTLDEAQYF 373
           SL+ EG+ PTLDE   F
Sbjct: 433 SLITEGVNPTLDEVSKF 449


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 304  KEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQNQ 420
            + F+ +L KLI    +P + +Q  +LSLI+  A A Q +
Sbjct: 884  RSFLPDLFKLIKDFWNPHSNLQFTILSLIESLARAMQGE 922


>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 397 WADAFQNQAELQGVGQVYNELRTKGVE 477
           WA  FQ+   L  V  V N +R +G+E
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIE 205


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +2

Query: 71  KIEQATDGALPSENWALNMEICDIINSSTD 160
           KI   +D A+PS ++A N+    +I+++TD
Sbjct: 640 KISTVSDTAVPSMSFANNISSRSVISAATD 669


>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 66  VKKLNKPQMAHYHLKIGL 119
           +  L KP+ AH+HLK+ L
Sbjct: 226 ITALQKPKRAHFHLKMDL 243


>SPAC17A5.18c |rec25|mug19|meiotic recombination protein
           Rec25|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 599 AWRVLRQDGSXEGNQLVRRPSGTLRC 522
           A +VL +DGS +G+QL++   G L C
Sbjct: 122 AQKVLEEDGSQQGSQLIQ---GLLTC 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,908
Number of Sequences: 5004
Number of extensions: 65263
Number of successful extensions: 170
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)