Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0071
(599 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34) 83 2e-16
SB_18055| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 5e-16
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 63 1e-10
SB_53310| Best HMM Match : VHS (HMM E-Value=0) 62 4e-10
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13) 29 3.8
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 27 8.8
SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05) 27 8.8
>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
Length = 674
Score = 83.0 bits (196), Expect = 2e-16
Identities = 45/89 (50%), Positives = 56/89 (62%)
Frame = +2
Query: 80 QATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTVLEH 259
+ATDG L SE+W+LN+EICDIIN + +GPKDA KAIRKRLT + KN+ V+ TLTVLE
Sbjct: 2 RATDGGLASEDWSLNLEICDIINETDEGPKDAAKAIRKRLTNN--KNFKSVLLTLTVLES 59
Query: 260 A*KTVESRSMFSSAIRNLYQSW*N*LAPK 346
K R A + L+PK
Sbjct: 60 CIKNCGHRFHVLVAKKEFLDEMTKLLSPK 88
Score = 51.2 bits (117), Expect = 6e-07
Identities = 19/33 (57%), Positives = 24/33 (72%)
Frame = +1
Query: 256 TCVKNCGKPFHVLVCNKEFISELVKLIGPKNDP 354
+C+KNCG FHVLV KEF+ E+ KL+ PK P
Sbjct: 59 SCIKNCGHRFHVLVAKKEFLDEMTKLLSPKQSP 91
>SB_18055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 61
Score = 81.4 bits (192), Expect = 5e-16
Identities = 34/60 (56%), Positives = 45/60 (75%)
Frame = +1
Query: 349 DPPTVVQDKVLSLIQCWADAFQNQAELQGVGQVYNELRTKGVEFPMTDLDAMGPIFTPQR 528
+PP VVQ+K+LSLIQ WADAF+N ++ + Q Y LR++G+EFP DLD + PIFTP R
Sbjct: 2 NPPQVVQEKILSLIQDWADAFRNSPDMSAILQTYEGLRSQGIEFPPKDLDTLSPIFTPHR 61
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 63.3 bits (147), Expect = 1e-10
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 259 CVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQNQAELQGV 438
C+KNCG H + K+F+ E+ LI DP V+DK L LIQ W+ AF+N+ + + V
Sbjct: 139 CMKNCGSIIHDEIATKDFMDEMRNLIKNGADP---VKDKALGLIQTWSHAFRNEPKYKIV 195
Query: 439 GQVYNELRTKGVEFP-MTDLDAM 504
+N ++ +G +FP + DAM
Sbjct: 196 QDTFNLMKMEGCKFPAFNESDAM 218
>SB_53310| Best HMM Match : VHS (HMM E-Value=0)
Length = 253
Score = 61.7 bits (143), Expect = 4e-10
Identities = 26/82 (31%), Positives = 48/82 (58%)
Frame = +1
Query: 259 CVKNCGKPFHVLVCNKEFISELVKLIGPKNDPPTVVQDKVLSLIQCWADAFQNQAELQGV 438
CV NCGK FH+ +C+++F+SE ++ + P V DK LI+ W + F+ +L +
Sbjct: 103 CVNNCGKVFHLEICSRDFVSEAKSILLSRTHPK--VMDKFKELIKEWVNMFKEDPQLSLI 160
Query: 439 GQVYNELRTKGVEFPMTDLDAM 504
+ +L+T+GV+ + +D +
Sbjct: 161 SVMCEQLKTEGVDLGVVQVDVI 182
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/59 (42%), Positives = 37/59 (62%)
Frame = +2
Query: 77 EQATDGALPSENWALNMEICDIINSSTDGPKDAIKAIRKRLTTSAGKNYTVVMYTLTVL 253
E+AT +E+W + MEICD I S +GPKDA+++I KR+ +N + M LT+L
Sbjct: 45 EKATSELNTTEDWQIIMEICDKIPRSPNGPKDALRSIMKRV---IHRNPHIAMQALTLL 100
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +2
Query: 35 RNWNPFSTPVGQKIEQATDGALPSENWALNMEIC-----DIINSSTDGPK 169
RN N P ++++ DG P E+++L E+C ++ N DG K
Sbjct: 2498 RNQNSAKEPAKRRVDHCDDGVCPQESFSLE-EVCYRRSSELKNCQQDGQK 2546
>SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)
Length = 1252
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 406 AFQNQAELQGVGQVYNELRT--KGVEFPMTDLDAMGPIFTPQRSVPDGRRTS 555
A +NQA+ Q G +ELRT K V T L+ I +P +P +R S
Sbjct: 626 AMENQAQSQSKGSKLSELRTNVKHVGSCCTKLEVSDEIDSPILDIPTKKRLS 677
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 343 KNDPPTVVQDKVLSLIQCWADAFQNQAELQGVGQVYNELRTKGVEFPMTDLDAM 504
+NDPP++ S++Q D N A +Q V + + K ++ ++ A+
Sbjct: 378 RNDPPSITNHSTASMMQKLLDLISNNALIQHVTKPTRPVSLKTLDLVISSTPAL 431
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +2
Query: 44 NPFSTPVGQKIEQATDGALPS 106
NP STPV +AT G LPS
Sbjct: 145 NPLSTPVSTTSTKATQGLLPS 165
>SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 996
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 53 STPVGQKIEQATDGALPSENWALNMEICDIINSSTDGPK 169
STPV ++ +A G E+ +N E C + N STD K
Sbjct: 435 STPVWTQVGEAYKGGQQGEDMCMNGEFCYMYN-STDKTK 472
>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2641
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 62 VGQKIEQATDGALPSENWALNMEICDII 145
+G+K+ D ALP E ++L CD++
Sbjct: 110 LGKKVTLMPDDALPPEGFSLGAHECDVV 137
>SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05)
Length = 1395
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +3
Query: 228 W*CTR*LSWNMRKKLWKAVPCSRLQ*GIYIRVGKIDWPQK*SADGGARQSIEPHP 392
W TR LSW + +W CS + G +++ I+ P+K S A +P P
Sbjct: 1129 WCSTRRLSWPTQGDMW---VCSPTKMGAFVQQRLIEPPRKNSPRMSATIRFDPDP 1180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,837,270
Number of Sequences: 59808
Number of extensions: 517739
Number of successful extensions: 1189
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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