BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fbpv0070 (765 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325... 32 0.58 03_06_0559 + 34719296-34719410,34719519-34719577,34719664-347213... 29 4.1 06_01_0440 + 3127197-3127700,3128299-3128670 28 7.1 04_04_0624 + 26676765-26676879,26676955-26677093,26678012-266780... 28 7.1 04_04_1073 - 30606472-30606515,30606897-30606988,30607152-306072... 28 9.4 >10_08_0877 + 21230447-21230815,21231855-21232208,21232417-21232504, 21232844-21233268,21233477-21233632,21233849-21234016, 21234170-21234310,21234393-21234629,21234710-21234823, 21235096-21235272 Length = 742 Score = 31.9 bits (69), Expect = 0.58 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = -3 Query: 451 RIGYRAPQKSPGSTACSGSTRINIPSGKLGLEPVGAV-MELPSTSSQNAESLAFLVV 284 R+ P ++ + A +G I +P G +G +P+G V +++ S S ++ F ++ Sbjct: 84 RVAAEPPPEAAAAAAANGVRLIGVPRGGVGDQPIGFVPLKISSFSESKSDDKRFYII 140 >03_06_0559 + 34719296-34719410,34719519-34719577,34719664-34721322, 34722421-34722562,34722645-34723330 Length = 886 Score = 29.1 bits (62), Expect = 4.1 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%) Frame = -3 Query: 454 GRIGYRAPQKSP--GSTACSGSTRINIPSGKLGLEPVGAVMELPSTSSQNAES 302 G YR P P GS SG+T ++ S G PVG ++ S SS ++ + Sbjct: 250 GLTSYRLPTGKPLDGSLKSSGNTSASVVSQSNGGAPVGPKVKASSRSSPDSRA 302 >06_01_0440 + 3127197-3127700,3128299-3128670 Length = 291 Score = 28.3 bits (60), Expect = 7.1 Identities = 13/30 (43%), Positives = 19/30 (63%) Frame = +2 Query: 521 LPNLIALQHIPLSPAGVIAKRARTDSPFPN 610 LP+L+ + HI + V A+RA TD FP+ Sbjct: 164 LPHLVGIGHIARAIRFVRAERASTDGTFPH 193 >04_04_0624 + 26676765-26676879,26676955-26677093,26678012-26678083, 26678174-26678317,26678402-26678530,26678819-26678938, 26679015-26679076,26679937-26680170,26680259-26680485, 26680551-26680683,26680787-26680944,26681139-26681351, 26681482-26681730 Length = 664 Score = 28.3 bits (60), Expect = 7.1 Identities = 18/40 (45%), Positives = 21/40 (52%) Frame = -1 Query: 168 TNRFIHLVDFSGD*RAKFFNANFENFCKQCGVISI*CIDA 49 T FI LVD K NAN EN C V+++ CIDA Sbjct: 590 TEEFIKLVD------PKLMNANHENLGIVCNVVNL-CIDA 622 >04_04_1073 - 30606472-30606515,30606897-30606988,30607152-30607243, 30607362-30607469,30607614-30607748,30607826-30607871, 30608320-30608420,30608512-30608649,30608721-30608819, 30608920-30609036,30609941-30610102,30610271-30610330, 30611120-30611216,30611238-30611296,30611364-30611480, 30611922-30612020,30612115-30612180,30612405-30612542, 30612659-30612742,30612820-30612892,30612937-30612992, 30613074-30613182,30613253-30613335,30613406-30613489, 30613679-30613750,30613827-30613904,30613984-30614067, 30614142-30614212,30614497-30614566,30614866-30614955, 30615046-30615177,30615250-30615350,30615634-30615691, 30615762-30615878,30617981-30618133 Length = 1094 Score = 27.9 bits (59), Expect = 9.4 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 447 LGTGPPRNHLAQQPAQGQRE 388 L T PP +HL Q+P G+RE Sbjct: 905 LATEPPTDHLMQRPPVGRRE 924 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,964,914 Number of Sequences: 37544 Number of extensions: 457647 Number of successful extensions: 1154 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1129 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1154 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 2051430072 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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