Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0070
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67140.1 68418.m08464 F-box family protein similar to unknown...    28   5.9  
At5g63990.1 68418.m08035 3'(2'),5'-bisphosphate nucleotidase, pu...    28   5.9  

>At5g67140.1 68418.m08464 F-box family protein similar to unknown
           protein (dbj|BAA78736.1) ; similar to SKP1 interacting
           partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 228

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 378 GMLILVDPEQAVEPGDFWGARYPIRPIVSRITI 476
           G+L+LV+  + +E  + WG R P+   ++ +TI
Sbjct: 171 GLLVLVNKCRKLESINLWGTRVPVDCFIALLTI 203


>At5g63990.1 68418.m08035 3'(2'),5'-bisphosphate nucleotidase,
           putative / inositol polyphosphate 1-phosphatase,
           putative similar to SP|Q42546 3'(2'),5'-bisphosphate
           nucleotidase (EC 3.1.3.7) {Arabidopsis thaliana};
           contains Pfam profile PF00459: Inositol monophosphatase
           family
          Length = 357

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 252 LTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPTGSK 362
           L++GD E ++  T+KA   + W    G+ + +  G K
Sbjct: 263 LSRGDGEVYLRFTRKARPESIWNHAAGSIIVSEAGGK 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,500,305
Number of Sequences: 28952
Number of extensions: 350710
Number of successful extensions: 898
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)