Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0069
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    28   1.6  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   6.3  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    26   6.3  

>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 685 KNLGPIHSIPFNILDKPLLRSFFF 614
           KN  P + +PF ILD P LR  F+
Sbjct: 170 KNRSPENLLPFRILDAPELRDDFY 193


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/75 (25%), Positives = 31/75 (41%)
 Frame = +3

Query: 333 KLLQLIMFTLASVSARKSRTPCVFIKTNSIWHGNVYVKKRITIKTLFGLALSLGNITFYL 512
           K+L  ++   + V         +F  TN      +Y ++R        +  SLG +  YL
Sbjct: 172 KILHRLILYNSKVGDSPRFCSALFQITNRATQLRLYSRRRFWNDCSILITNSLGTLNAYL 231

Query: 513 KVSFYSIKKEKKTAL 557
           K    S K+ +KT L
Sbjct: 232 KQHVKSYKQREKTRL 246


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +2

Query: 428 R*CLCEETHYDQNS--IWTCIIFRKYHLLFEGIFLQH*KGKKNSFMSISSNRSMLSN 592
           R CL E +  D +S   W+ +   KY   F  IFL     K+ SF+    N S   N
Sbjct: 200 RQCLIERSSADNSSDKFWSTLNSIKYFTAFPAIFLGIFAKKRFSFLWFLWNTSSAIN 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,526,615
Number of Sequences: 5004
Number of extensions: 44933
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)