Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0069
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine re...    30   1.5  
Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical p...    29   4.5  
AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical ...    28   5.9  
U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical pr...    28   7.9  

>AF125442-2|AAD12792.1|  360|Caenorhabditis elegans Serpentine
           receptor, class v protein19 protein.
          Length = 360

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 361 NVNIIN*SSLKSF*CVIVELICFLTILFVNWKIVWLNKPELLIELKPRTNLLMKVC 194
           N NII  S+  +F  VI+  +  L    + WK +      +LI L+    L  +VC
Sbjct: 225 NPNIIKKSTKTAFVFVIISCLICLIFYSLIWKFIKTRSQTVLISLQREIRLAFQVC 280


>Z81489-10|CAB04004.2|  337|Caenorhabditis elegans Hypothetical
           protein C55A1.8 protein.
          Length = 337

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 23/32 (71%)
 Frame = +3

Query: 453 ITIKTLFGLALSLGNITFYLKVSFYSIKKEKK 548
           ++I ++F L+ ++ +   +LK+SF+SIK  +K
Sbjct: 28  VSIFSIFVLSYTISSFYIFLKLSFFSIKDREK 59


>AF016678-3|AAB66150.2|  297|Caenorhabditis elegans Hypothetical
           protein K07E8.5 protein.
          Length = 297

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -1

Query: 304 LICFLTILFVNWKIVWLNKPELLIELKPRTNLLMKV---C*LNCYLV 173
           + C  T L VN+  + LN P +L+     +NLL+ V       CYL+
Sbjct: 211 IFCNFTALMVNFMEIILNDPSMLVYFVDLSNLLVVVNGTANFFCYLI 257


>U80450-4|AAB37829.1|  926|Caenorhabditis elegans Hypothetical
           protein M01E11.3 protein.
          Length = 926

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 545 KNSFMSISSNRSMLSN*IDRGSLKKKTSEKW 637
           KNS   +S N   +SN +++G L+ KT E W
Sbjct: 373 KNSISKVSQN---ISNQVEKGLLQNKTIEDW 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,567
Number of Sequences: 27780
Number of extensions: 242326
Number of successful extensions: 451
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)