Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0068
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    26   2.9  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    26   3.9  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   5.1  
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ...    25   5.1  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   5.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.8  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   9.0  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.0  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    25   9.0  

>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 349 SSLRYLFSEP--LWTTVINIRPRPQHRPS*SFRAP 447
           SSL Y  S P  L T    + P PQ RP+ S R P
Sbjct: 19  SSLVYGLSRPQFLDTAASEVSPIPQERPTTSLRKP 53


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 198 SFLEPISEPLWTTVKTNKARPQHR 269
           S L+P S PLW      ++  +HR
Sbjct: 14  SMLQPFSNPLWVPTPVGRSGRKHR 37


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 144  LTGRPLLKVSLYITPI-LFSFLEPISEPLWTTVKTNK 251
            LT  P  + S    P+ LF  L+  S PLW  VKT++
Sbjct: 1325 LTLMPYDRTSSKEEPLNLFPKLKDTSSPLWNLVKTSR 1361


>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 290

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = +1

Query: 229 GPRSKQIRPGHSIVLP----TSFRAPVDHGVRDRSAPQRHSHVSSSL 357
           GPR+K+ +PG+ +V P       R  V+ G   RS  ++ S   SSL
Sbjct: 114 GPRTKEGQPGYHVVTPFILDDGRRILVNRGWIARSFAEQSSRDPSSL 160


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 310 RDRSAPQRHSHVSSSLRYLFSEPLWTTVINIRPRPQ 417
           +++  P++HSHV    R  FS+ L     N+ P P+
Sbjct: 85  KEKMIPKKHSHVKQEKR--FSKSLQLQDPNVWPSPE 118


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 422  DLPNPLEPLWTTAYETAQHHSIKTLI 499
            DLPN +E LW T+   ++H S  T+I
Sbjct: 1343 DLPNEIEALW-TSLALSRHKSNWTVI 1367


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 178 TLPLSYFPSLNQFQSPCGPRSKQ 246
           TL +S  P+L +F S  GPR ++
Sbjct: 414 TLDISNTPNLRRFSSSFGPRERK 436


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 189  ILFSFLEPISEPLWTTVKT 245
            +L +F    SEPL+ TVKT
Sbjct: 961  VLLNFYNHFSEPLFVTVKT 979


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 178 TLPLSYFPSLNQFQSPCGPRSKQIRPGHSIVLPTSF 285
           T+P+S+FP L     P     + I   HS  LP  F
Sbjct: 264 TMPISFFPKLKNVWLPL---LQSIASKHSFFLPALF 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,357
Number of Sequences: 5004
Number of extensions: 46575
Number of successful extensions: 105
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)