Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0068
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate recep...    29   1.5  
AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic gl...    29   1.5  
Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical pr...    27   6.1  
Z92812-4|CAB07278.1|  313|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AC006693-8|AAQ91896.1|  281|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U97007-1|AAB52291.1|  932|Caenorhabditis elegans Glutamate receptor
           family (ampa)protein 5 protein.
          Length = 932

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 186 PILFSFLEPISEPLWTTVKTN 248
           P LFSFL P+S  +WT + T+
Sbjct: 556 PDLFSFLNPLSWQIWTAIATS 576


>AF318609-1|AAK01097.1|  425|Caenorhabditis elegans ionotropic
           glutamate receptor GLR-5 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 186 PILFSFLEPISEPLWTTVKTN 248
           P LFSFL P+S  +WT + T+
Sbjct: 116 PDLFSFLNPLSWQIWTAIATS 136


>Z73103-5|CAA97422.1|  380|Caenorhabditis elegans Hypothetical
           protein C08F8.6 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 327 WR*AVSYAVV--HRGSKGCRKDDAVAWPYLF*PWSTGAL 217
           +R  V YA V  H G + CR+DD   W Y+    + G+L
Sbjct: 183 FRGTVKYAPVSCHAGRELCRQDDCETWLYMVVELTKGSL 221


>Z78546-5|CAO79773.1|  962|Caenorhabditis elegans Hypothetical
           protein T21H8.1b protein.
          Length = 962

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 23/86 (26%), Positives = 36/86 (41%)
 Frame = +1

Query: 259 HSIVLPTSFRAPVDHGVRDRSAPQRHSHVSSSLRYLFSEPLWTTVINIRPRPQHRPS*SF 438
           HS   P S  +   +G   RS  Q  S  +SSL  +  +  W++     PR  H    + 
Sbjct: 396 HSTSFPVSLSSTTSNGKGPRSTVQSSSSYNSSLSAVSPQHNWSSAGAGTPRQLHPIGGNQ 455

Query: 439 RAPVDHGVRDRSAPQHQNPHKPKQRQ 516
           R      V + ++ Q+ +P  P  RQ
Sbjct: 456 R------VNNITSAQYCSPSPPAARQ 475


>Z78546-4|CAB01771.3|  920|Caenorhabditis elegans Hypothetical
           protein T21H8.1a protein.
          Length = 920

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 23/86 (26%), Positives = 36/86 (41%)
 Frame = +1

Query: 259 HSIVLPTSFRAPVDHGVRDRSAPQRHSHVSSSLRYLFSEPLWTTVINIRPRPQHRPS*SF 438
           HS   P S  +   +G   RS  Q  S  +SSL  +  +  W++     PR  H    + 
Sbjct: 396 HSTSFPVSLSSTTSNGKGPRSTVQSSSSYNSSLSAVSPQHNWSSAGAGTPRQLHPIGGNQ 455

Query: 439 RAPVDHGVRDRSAPQHQNPHKPKQRQ 516
           R      V + ++ Q+ +P  P  RQ
Sbjct: 456 R------VNNITSAQYCSPSPPAARQ 475


>Z92812-4|CAB07278.1|  313|Caenorhabditis elegans Hypothetical
           protein T03E6.4 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 16  GCLMVSFIFLTAILIVT*NVYQFM 87
           GC+M+  +  T IL  + N+Y FM
Sbjct: 203 GCVMIIVVCFTTILFCSINIYYFM 226


>Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical
           protein T03E6.1 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 16  GCLMVSFIFLTAILIVT*NVYQFM 87
           GC+M+  +  T IL  + N+Y FM
Sbjct: 203 GCVMIIVVCFTTILFCSINIYYFM 226


>AC006693-8|AAQ91896.1|  281|Caenorhabditis elegans Hypothetical
           protein W02H5.9 protein.
          Length = 281

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 365 KYRNEELTWE*RCGAERSR 309
           K+ N++LTWE  C  ERS+
Sbjct: 10  KFSNDKLTWEQECTFERSQ 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,289,490
Number of Sequences: 27780
Number of extensions: 266500
Number of successful extensions: 589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)