Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0068
         (518 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01840.1 68418.m00103 ovate family protein 59% similar to ova...    29   2.5  
At5g35890.1 68418.m04310 hypothetical protein                          28   4.3  
At1g47380.1 68414.m05245 protein phosphatase 2C-related / PP2C-r...    28   4.3  
At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger) fa...    27   5.7  
At1g55480.1 68414.m06346 expressed protein                             27   5.7  
At1g09160.2 68414.m01023 protein phosphatase 2C-related / PP2C-r...    27   5.7  
At1g09160.1 68414.m01022 protein phosphatase 2C-related / PP2C-r...    27   5.7  

>At5g01840.1 68418.m00103 ovate family protein 59% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 270

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 328 QRHSHVSSSLRYLFSEPLWTTVINIRPRPQHRPS*SFRAPVDHGVRDRS 474
           Q +S  S    +    P  TT ++  PRP  RPS S +AP  H  R  S
Sbjct: 35  QPNSTTSKKKHHAVPTPTSTTPLS--PRPPRRPSHSSKAPPSHPPRKSS 81


>At5g35890.1 68418.m04310 hypothetical protein 
          Length = 287

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 141 LLTGRPLLKVSLYITPILFSFLEPISEPLWTTVKTNKA 254
           LL G PLL + +Y+ PIL  F  P S  +W    T K+
Sbjct: 19  LLLGGPLLGLFVYLQPIL-GFGSPFSPLVWPRSVTLKS 55


>At1g47380.1 68414.m05245 protein phosphatase 2C-related /
           PP2C-related contains similarity to protein phosphatase
           2C GB:AAD25933 GI:4587992 from [Arabidopsis thaliana]
          Length = 428

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -1

Query: 407 GLIFMTVVHRGSENKYRNEELTWE*RCGAERSRTPWSTGALKDVGRTMLWPGLICFDR 234
           G+ +++  HR   N+   + +T     G E  R   +TG   ++G    WPG +C  R
Sbjct: 159 GVYYLSADHRLEINEEERDRVT---ASGGEVGRL--NTGGGTEIGPLRCWPGGLCLSR 211


>At5g19080.1 68418.m02268 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 378

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +1

Query: 325 PQRHSHVSSSLRYLFSEPLWTTVINIRPRPQHRPS*SFRAPVDHGVRDRSAPQHQNPHKP 504
           P +     +   Y  + P+ T  +++ P P   PS S   P     R      HQN + P
Sbjct: 31  PPQQPPPQNGYSYSHNYPVSTPQLSLPPPPAQPPSSSQPPPSQISYRPYGQNYHQNQYYP 90

Query: 505 KQ 510
           +Q
Sbjct: 91  QQ 92


>At1g55480.1 68414.m06346 expressed protein
          Length = 335

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = +1

Query: 178 TLPLSYFPSLNQFQSPCGPRSKQIRPGHSIVLPTSFRAPVDHGVRDRSAPQRHSHVS 348
           +L  S +PSL  + SP  PR++Q +   S++  +SF +     +   SA   ++HV+
Sbjct: 2   SLAPSSYPSL--YSSPSLPRTQQTKQNPSLITQSSFISAKSLFLSSNSASLCNTHVA 56


>At1g09160.2 68414.m01023 protein phosphatase 2C-related /
           PP2C-related similar to GB:AAC16260
          Length = 428

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = -1

Query: 395 MTVVHRGSENKYRNEELTWE*RCGAERSRTPWSTGALKDVGRTMLWPGLICFDR 234
           +TV HR  EN    E +T     G E  R     G   +VG    WPG +C  R
Sbjct: 167 LTVDHRLEENVEERERIT---ASGGEVGRLNVFGG--NEVGPLRCWPGGLCLSR 215


>At1g09160.1 68414.m01022 protein phosphatase 2C-related /
           PP2C-related similar to GB:AAC16260
          Length = 428

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 19/54 (35%), Positives = 23/54 (42%)
 Frame = -1

Query: 395 MTVVHRGSENKYRNEELTWE*RCGAERSRTPWSTGALKDVGRTMLWPGLICFDR 234
           +TV HR  EN    E +T     G E  R     G   +VG    WPG +C  R
Sbjct: 167 LTVDHRLEENVEERERIT---ASGGEVGRLNVFGG--NEVGPLRCWPGGLCLSR 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,739,334
Number of Sequences: 28952
Number of extensions: 253367
Number of successful extensions: 535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)