Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0067
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    26   5.3  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    25   7.1  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 345 KLLKFFIG*KNIKSFSIVICLHTAFYHYFLDSTMLNE 235
           K ++  IG K+I+   ++ CL T+FY  F  ++ +N+
Sbjct: 435 KQMRNEIGLKDIEPKVLIDCLKTSFYENFRAASNMNK 471


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 27  QFTAS*AICTNLQTYFIFDTYNYVIYKSFYFY 122
           +FTAS A   N Q   ++ TY+    +S Y+Y
Sbjct: 246 RFTASEATTVNGQNQSVYLTYDVPYGRSLYYY 277


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 440 KILNEEHYDLHHKLVIYVFRETIFCIN 520
           K++   H  LH +LVI  + +  FCI+
Sbjct: 3   KLVKHCHTSLHSELVILFYAKNRFCIS 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,925
Number of Sequences: 5004
Number of extensions: 47868
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)