Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0067
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.63 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   3.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   4.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.4  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           22   5.8  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           22   5.8  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   7.7  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    21   7.7  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    21   7.7  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    21   7.7  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    21   7.7  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    21   7.7  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    21   7.7  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    21   7.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 371 WIEIYNNVTFILTNYYKRYVYYLKILNEEH 460
           W++I+ N    L NYYK     +K L+  H
Sbjct: 575 WLDIHGNFIESLGNYYKIRDSKVKTLDASH 604


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 232 KNVGFHKSSCNINVRY 185
           K    +KSSC INV Y
Sbjct: 149 KPPAIYKSSCEINVEY 164


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 78  FDTYNYVIYKSFYFYLNYTD 137
           ++  NY  YK  Y+ +NY +
Sbjct: 96  YNNNNYNNYKKLYYNINYIE 115


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 78  FDTYNYVIYKSFYFYLNYTD 137
           ++  NY  YK  Y+ +NY +
Sbjct: 106 YNNNNYNNYKKLYYNINYIE 125


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 422 RYVYYLKILNEEHYDLHHKLVIYVFRETIFCINSNK 529
           RY + LK  N EH     K ++Y+     FC  + K
Sbjct: 57  RYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPK 92


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 422 RYVYYLKILNEEHYDLHHKLVIYVFRETIFCINSNK 529
           RY + LK  N EH     K ++Y+     FC  + K
Sbjct: 58  RYNFQLKPYNPEHKPPGPKDLVYLEPSPPFCEKNPK 93


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  NYVIYKSFYFYLNYTD 137
           NY  YK  Y+ +NY +
Sbjct: 102 NYNNYKKLYYNINYIE 117


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  NYVIYKSFYFYLNYTD 137
           NY  YK  Y+ +NY +
Sbjct: 102 NYNNYKKLYYNINYIE 117


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  NYVIYKSFYFYLNYTD 137
           NY  YK  Y+ +NY +
Sbjct: 102 NYNNYKKLYYNINYIE 117


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  NYVIYKSFYFYLNYTD 137
           NY  YK  Y+ +NY +
Sbjct: 102 NYNNYKKLYYNINYIE 117


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  NYVIYKSFYFYLNYTD 137
           NY  YK  Y+ +NY +
Sbjct: 102 NYNNYKKLYYNINYIE 117


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  NYVIYKSFYFYLNYTD 137
           NY  YK  Y+ +NY +
Sbjct: 102 NYNNYKKLYYNINYIE 117


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  NYVIYKSFYFYLNYTD 137
           NY  YK  Y+ +NY +
Sbjct: 102 NYNNYKKLYYNINYIE 117


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 90  NYVIYKSFYFYLNYTD 137
           NY  YK  Y+ +NY +
Sbjct: 102 NYNNYKKLYYNINYIE 117


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = -3

Query: 214 KSSCNINVRY 185
           KSSC I+VRY
Sbjct: 142 KSSCEIDVRY 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,259
Number of Sequences: 438
Number of extensions: 3820
Number of successful extensions: 37
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)