Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0066
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    27   2.2  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    26   5.2  
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    26   6.8  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   9.0  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    25   9.0  

>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 436 LNSTVNFS*TFDSISSKQNCVLSAIF*RSR*R 531
           LN  +N   +FD+I SKQNC L  I+ R + R
Sbjct: 38  LNKQIN-KISFDTIRSKQNCRLKEIYCRLKIR 68


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 583 VNIITLYKFRLTFTLSRTLKNSH*AYRLRIQIWER 687
           +N  +LYK  ++F LS  + N    YR   Q W R
Sbjct: 244 LNEFSLYKTNISFYLSNFIVNGVLQYRKEFQRWLR 278


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 667 RIQIWERNCFDKNV 708
           RI +W RNC DK+V
Sbjct: 188 RIAVWTRNCNDKDV 201


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 84  FWLQNQRRGQPKRK*LTSAFRSYLVPNS 1
           FW Q+ RR  PK++ L+S   S + P +
Sbjct: 58  FWSQSPRRNAPKKE-LSSLLESTITPKA 84


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 619 FTLSRTLKNSH*AYRLRIQIWERNCFDKNVGLSFNF 726
           F+     + S  + RL    W R+C DKN  L+++F
Sbjct: 66  FSSPNVQEGSKRSLRLAKTNWIRDCVDKNTLLNYSF 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,820,337
Number of Sequences: 5004
Number of extensions: 52031
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)