Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0066
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0009 - 13657511-13657578,13658060-13658276,13658363-13658509     30   2.3  
10_08_0457 + 18076911-18077272,18077356-18077475,18077554-180777...    28   9.4  

>09_04_0009 - 13657511-13657578,13658060-13658276,13658363-13658509
          Length = 143

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 25/62 (40%), Positives = 30/62 (48%)
 Frame = -1

Query: 439 LAAANIRQGALAVVLPAVPGIEAVTFVNFLSAFRCLSDVVSQEVGALNVAVFAWTGTFAA 260
           LAA  +   A  V++ A     AV  V  L+A   L  V    VGAL+VAVF    T AA
Sbjct: 55  LAALTVLLVAAFVLVAAATSAAAVAAVVSLAALSALLAVAY--VGALSVAVFVVAATTAA 112

Query: 259 PV 254
            V
Sbjct: 113 TV 114


>10_08_0457 +
           18076911-18077272,18077356-18077475,18077554-18077782,
           18077993-18078652,18079224-18079425,18079521-18079611,
           18079780-18079837
          Length = 573

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 221 EGLRIVPDQRPDWCSKGASPGKD 289
           E L I+ D  PDW SK   PG D
Sbjct: 529 EQLHILEDLSPDWISKKVIPGGD 551


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,236,138
Number of Sequences: 37544
Number of extensions: 338586
Number of successful extensions: 773
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)