Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0066
         (769 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)                  31   1.4  
SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)                    31   1.4  
SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)                    29   3.1  

>SB_42793| Best HMM Match : PARP (HMM E-Value=5.4e-22)
          Length = 585

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 715 IAPHFCRSNCAPRFEYAICTL 653
           I  H CR +CAPR  + +CT+
Sbjct: 5   IPGHVCRKSCAPRHAHTLCTI 25


>SB_2235| Best HMM Match : Arf (HMM E-Value=3.1e-13)
          Length = 334

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +2

Query: 119 EAWLRRKSHEELGMSGRAREQP*HVQDEHEP 211
           EAWL RK H E  +S   RE+   V+++H+P
Sbjct: 223 EAWLERKEHREDSLSEHEREE---VKNKHKP 250


>SB_15782| Best HMM Match : DUF845 (HMM E-Value=5.8)
          Length = 283

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 126 GFEENLMRNWVCLVEHESSRDTSKTN 203
           GFEE + R W+   + E S D +KTN
Sbjct: 33  GFEEEVKRQWIGCDKLEGSNDITKTN 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,199,655
Number of Sequences: 59808
Number of extensions: 393022
Number of successful extensions: 836
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)