Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0065
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 393 VDRSNTTLALCTGPNCEKYSRSCRWPTVQAR 301
           V   NT    CT  + EKY   C    V+ +
Sbjct: 182 VSMENTENKSCTDSDIEKYKMFCNLENVKLK 212


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 423 NLLVPQLQLMQLISRFTHLKVST*VFNCK*LDIL 524
           NL +P+  L +  + + + K +T  ++C  +D+L
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLL 236


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/34 (26%), Positives = 20/34 (58%)
 Frame = +3

Query: 423 NLLVPQLQLMQLISRFTHLKVST*VFNCK*LDIL 524
           NL +P+  L +  + + + K +T  ++C  +D+L
Sbjct: 203 NLHLPRFTLEKFFTDYCNSKTNTGEYSCLKVDLL 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,192
Number of Sequences: 438
Number of extensions: 3489
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)