Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0065
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 66 2e-11
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 64 7e-11
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 64 7e-11
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 64 1e-10
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 64 1e-10
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 63 2e-10
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 62 3e-10
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 62 3e-10
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 62 3e-10
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 62 4e-10
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 62 5e-10
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 61 6e-10
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 60 1e-09
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 60 1e-09
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 60 1e-09
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 60 2e-09
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 60 2e-09
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 60 2e-09
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 60 2e-09
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 60 2e-09
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 59 3e-09
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 59 3e-09
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 59 3e-09
At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein... 59 3e-09
At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein... 59 3e-09
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 59 3e-09
At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein... 58 4e-09
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 58 6e-09
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 58 6e-09
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 58 6e-09
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ... 57 1e-08
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 57 1e-08
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 57 1e-08
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 57 1e-08
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 57 1e-08
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 57 1e-08
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 57 1e-08
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 57 1e-08
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 57 1e-08
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 57 1e-08
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 57 1e-08
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 57 1e-08
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 57 1e-08
At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing ... 57 1e-08
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 56 2e-08
At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing ... 56 3e-08
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 55 4e-08
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 55 4e-08
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 55 4e-08
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 55 4e-08
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 55 6e-08
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 55 6e-08
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 54 7e-08
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 54 1e-07
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 54 1e-07
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 54 1e-07
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 54 1e-07
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 54 1e-07
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 53 2e-07
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 52 3e-07
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 52 3e-07
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 52 3e-07
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 52 4e-07
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 52 4e-07
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 52 4e-07
At5g51300.2 68418.m06360 splicing factor-related contains simila... 52 5e-07
At5g51300.1 68418.m06359 splicing factor-related contains simila... 52 5e-07
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 52 5e-07
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 52 5e-07
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 51 7e-07
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 51 7e-07
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 51 9e-07
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 50 1e-06
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 50 1e-06
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 50 2e-06
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 50 2e-06
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 50 2e-06
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 49 4e-06
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 49 4e-06
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 49 4e-06
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 49 4e-06
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 49 4e-06
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 48 5e-06
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 48 5e-06
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 48 6e-06
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 48 6e-06
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 48 8e-06
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 48 8e-06
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 47 1e-05
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 47 1e-05
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 47 1e-05
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 47 1e-05
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 47 1e-05
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 47 1e-05
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 47 1e-05
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 47 1e-05
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 46 2e-05
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 46 2e-05
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 46 3e-05
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 46 3e-05
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 45 4e-05
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 45 4e-05
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 45 4e-05
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ... 45 4e-05
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ... 45 4e-05
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 45 6e-05
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 45 6e-05
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 44 8e-05
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 44 8e-05
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 44 8e-05
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 44 1e-04
At4g16280.3 68417.m02471 flowering time control protein / FCA ga... 44 1e-04
At4g16280.2 68417.m02470 flowering time control protein / FCA ga... 44 1e-04
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 44 1e-04
At2g21690.1 68415.m02580 RNA-binding protein, putative similar t... 44 1e-04
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 43 2e-04
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 43 2e-04
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 43 2e-04
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 43 2e-04
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 43 2e-04
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 42 4e-04
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 42 6e-04
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 42 6e-04
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 42 6e-04
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 42 6e-04
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 41 7e-04
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 41 0.001
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 41 0.001
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 41 0.001
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 41 0.001
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 41 0.001
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 40 0.001
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 40 0.001
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 40 0.001
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 40 0.001
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 40 0.001
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 40 0.001
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 39 0.003
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 39 0.003
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 39 0.003
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 39 0.003
At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containi... 39 0.004
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 39 0.004
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 39 0.004
At1g45100.1 68414.m05170 polyadenylate-binding protein, putative... 39 0.004
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 39 0.004
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 39 0.004
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 38 0.005
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 38 0.005
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 38 0.007
At5g02530.1 68418.m00187 RNA and export factor-binding protein, ... 38 0.007
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 38 0.009
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 37 0.012
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 37 0.012
At5g65260.1 68418.m08209 polyadenylate-binding protein family pr... 37 0.016
At5g59950.3 68418.m07518 RNA and export factor-binding protein, ... 37 0.016
At5g59950.2 68418.m07519 RNA and export factor-binding protein, ... 37 0.016
At5g59950.1 68418.m07517 RNA and export factor-binding protein, ... 37 0.016
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 37 0.016
At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) famil... 36 0.021
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 36 0.021
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 36 0.027
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 36 0.036
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 35 0.063
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 35 0.063
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 35 0.063
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 35 0.063
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 34 0.083
At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing ... 34 0.11
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 33 0.15
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 33 0.15
At3g48830.1 68416.m05333 polynucleotide adenylyltransferase fami... 33 0.15
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ... 33 0.15
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.19
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 33 0.19
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 32 0.45
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 31 0.59
At1g79100.1 68414.m09223 arginine/serine-rich protein-related si... 31 0.59
At5g23590.1 68418.m02768 DNAJ heat shock N-terminal domain-conta... 31 0.78
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 31 0.78
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 31 1.0
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 31 1.0
At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing ... 31 1.0
At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) famil... 30 1.4
At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing ... 30 1.4
At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein... 30 1.8
At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) famil... 30 1.8
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 30 1.8
At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing ... 29 2.4
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 29 2.4
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 29 2.4
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 29 3.1
At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing ... 29 3.1
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 29 3.1
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 29 4.1
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 28 5.5
At2g33440.1 68415.m04099 splicing factor family protein similar ... 28 5.5
At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing ... 27 9.6
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/72 (45%), Positives = 45/72 (62%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
A R+YVGNL W V + +L + FS+ G V ARVV+DR TG S+G+GF+ + D
Sbjct: 243 AFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD----VDEL 298
Query: 458 NKQIHTLEGFNL 493
N+ I L+G NL
Sbjct: 299 NEAISALDGQNL 310
Score = 54.0 bits (124), Expect = 1e-07
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 460
A+L+VGNLA+ V + L F Q G V+ A V+++R T S+G+GF+ +S A A
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVE 209
Query: 461 K-QIHTLEGFNLSVQLQIIRYSEF*LVFKMAE-ALPXYPDSDFSDEDQSPLDSLFNK 625
K + L G L+V R S ++ E A Y + D D L+ LF++
Sbjct: 210 KFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSE 266
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG LAW LR YF QFG + A V+ D+S+G SKGYGF+ F P AA A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 464 QIHTLEG 484
++G
Sbjct: 68 PAPVIDG 74
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 64.5 bits (150), Expect = 7e-11
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG LAW LR YF QFG + A V+ D+S+G SKGYGF+ F P AA A
Sbjct: 8 KVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQKACVD 67
Query: 464 QIHTLEG 484
++G
Sbjct: 68 PAPVIDG 74
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L++G ++W +L+EYFS FG V A ++ DR+TG ++G+GF+ FA P A A+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65
Query: 464 QIHTLEG 484
+ H ++G
Sbjct: 66 EKHNIDG 72
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R +++VG L +V + YF QFG V++D +T +G+GFI + S A
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKV 165
Query: 455 TNKQIHTLEGFNLSVQ 502
K H L G + V+
Sbjct: 166 LLKTFHELNGKMVEVK 181
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 63.7 bits (148), Expect = 1e-10
Identities = 26/67 (38%), Positives = 44/67 (65%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L++G ++W +L+EYFS FG V A ++ DR+TG ++G+GF+ FA P A A+
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP-AVAEIVIT 65
Query: 464 QIHTLEG 484
+ H ++G
Sbjct: 66 EKHNIDG 72
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/76 (31%), Positives = 37/76 (48%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R +++VG L +V + YF QFG V++D +T +G+GFI + S A
Sbjct: 106 RTRKIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKV 165
Query: 455 TNKQIHTLEGFNLSVQ 502
K H L G + V+
Sbjct: 166 LLKTFHELNGKMVEVK 181
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 63.3 bits (147), Expect = 2e-10
Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 2/113 (1%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG LAW LR++F Q+G + A V+ D++TG SKGYGF+ F P AA A
Sbjct: 25 KVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACAD 84
Query: 464 QIHTLEGFNLSVQLQIIRYSEF*LVFKMAEALP--XYPDSDFSDEDQSPLDSL 616
++G + L + L + + +P P S + Q P SL
Sbjct: 85 PTPIIDGRRANCNLASLGRPRPPLPYAVIPNMPGRLRPASPYIGNVQGPRGSL 137
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/82 (35%), Positives = 52/82 (63%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
+++L++G +A+++ LRE F+++G V RV+ DR TG S+G+GF+ F S AA+ A
Sbjct: 39 SSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSA- 97
Query: 458 NKQIHTLEGFNLSVQLQIIRYS 523
I L+G +L ++ + Y+
Sbjct: 98 ---IQALDGRDLHGRVVKVNYA 116
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 62.5 bits (145), Expect = 3e-10
Identities = 23/64 (35%), Positives = 43/64 (67%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 442
+S + +++L++G L+W+V + L++ FS FG V R+ +D+ +G S+G+GF++FA
Sbjct: 35 SSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGD 94
Query: 443 AADA 454
A A
Sbjct: 95 ALSA 98
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 62.5 bits (145), Expect = 3e-10
Identities = 27/70 (38%), Positives = 39/70 (55%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+ +++VG LAW +R YF QFG + A V+ D++TG SKGYGF+ F AA A
Sbjct: 20 KLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRA 79
Query: 455 TNKQIHTLEG 484
++G
Sbjct: 80 CQNMNPVIDG 89
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 62.1 bits (144), Expect = 4e-10
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG LAW LR +F Q+G + A V+ D++TG SKGYGF+ F P AA A
Sbjct: 25 KVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVD 84
Query: 464 QIHTLEGFNLSVQLQIIRYSEF*LVFKMAEALP--XYPDSDFSDEDQSP 604
++G + L + S + + + P P S + QSP
Sbjct: 85 PTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPSPYVGSVQSP 133
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 61.7 bits (143), Expect = 5e-10
Identities = 27/86 (31%), Positives = 50/86 (58%)
Frame = +2
Query: 260 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
M S + +L++G ++W +L+EYF ++G + A ++ DR+TG ++G+GFI FA PS
Sbjct: 8 MESASDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPS 67
Query: 440 AAADATNKQIHTLEGFNLSVQLQIIR 517
A+ H ++G + + + R
Sbjct: 68 -VAERVIMDKHIIDGRTVEAKKAVPR 92
Score = 54.0 bits (124), Expect = 1e-07
Identities = 24/77 (31%), Positives = 41/77 (53%)
Frame = +2
Query: 272 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 451
AR +++VG L ++ + + YF QFG + V++D +T +G+GFI F S +
Sbjct: 119 ARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDM 178
Query: 452 ATNKQIHTLEGFNLSVQ 502
+K H L G + V+
Sbjct: 179 VLHKTFHELNGKMVEVK 195
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 61.3 bits (142), Expect = 6e-10
Identities = 32/72 (44%), Positives = 43/72 (59%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
A R+YVGNL W V +L FS+ G V ARVV DR TG S+G+GF++ ++ +
Sbjct: 206 AFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSN----ENEV 261
Query: 458 NKQIHTLEGFNL 493
N I L+G NL
Sbjct: 262 NVAIAALDGQNL 273
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 460
A+L+VGNL + V + L F Q G V+ + V+++R T S+G+GF+ ++ A A
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query: 461 K 463
K
Sbjct: 173 K 173
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
RLYVGNL+W V L F++ G V ARV++DR +G SKG+GF+ +S + K
Sbjct: 250 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS----SQEVQK 305
Query: 464 QIHTLEGFNL 493
I++L G +L
Sbjct: 306 AINSLNGADL 315
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L+VGNL++ V QL + F G V+ V++D+ TG S+G+GF+ S +A +A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM-STAAEVEAAAQ 158
Query: 464 QIHTLE 481
Q + E
Sbjct: 159 QFNGYE 164
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 60.5 bits (140), Expect = 1e-09
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
RLYVGNL+W V L F++ G V ARV++DR +G SKG+GF+ +S + K
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSS----SQEVQK 313
Query: 464 QIHTLEGFNL 493
I++L G +L
Sbjct: 314 AINSLNGADL 323
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/66 (36%), Positives = 40/66 (60%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L+VGNL++ V QL + F G V+ V++D+ TG S+G+GF+ S +A +A +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTM-STAAEVEAAAQ 158
Query: 464 QIHTLE 481
Q + E
Sbjct: 159 QFNGYE 164
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/70 (44%), Positives = 43/70 (61%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L+VGNL+WTV L F + G V ARVVFD TG S+GYGF+ ++S + A
Sbjct: 178 KLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETA--- 234
Query: 464 QIHTLEGFNL 493
+ +L+GF L
Sbjct: 235 -LESLDGFEL 243
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 433
+LY GNL + V L + F + V+++R TG S+G+ F+ ++
Sbjct: 86 KLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSN 135
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +2
Query: 239 GNSIIKVMASTAR--AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGY 412
GN + M + R + +L++G L+W LR+ F+ FG V A+V+ DR TG S+G+
Sbjct: 19 GNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGF 78
Query: 413 GFIEFASPSAAADATNK 463
GF+ F AA A ++
Sbjct: 79 GFVNFNDEGAATAAISE 95
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 59.7 bits (138), Expect = 2e-09
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +2
Query: 239 GNSIIKVMASTAR--AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGY 412
GN + M + R + +L++G L+W LR+ F+ FG V A+V+ DR TG S+G+
Sbjct: 19 GNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGF 78
Query: 413 GFIEFASPSAAADATNK 463
GF+ F AA A ++
Sbjct: 79 GFVNFNDEGAATAAISE 95
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 59.7 bits (138), Expect = 2e-09
Identities = 30/70 (42%), Positives = 43/70 (61%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
R+YVGNL+W V L FS+ G V ARV++DR +G SKG+GF+ + S +A
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNA--- 261
Query: 464 QIHTLEGFNL 493
I +L+G +L
Sbjct: 262 -IKSLDGADL 270
Score = 50.0 bits (114), Expect = 2e-06
Identities = 22/60 (36%), Positives = 35/60 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L+VGNL + V QL + F G V+ V++D+ TG S+G+GF+ +S S A +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG LAW ++R YF QFG + A ++ D++TG SKGYGF+ F +A A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 464 QIHTLEG 484
++G
Sbjct: 78 PNPVIDG 84
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG LAW ++R YF QFG + A ++ D++TG SKGYGF+ F +A A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDSATRAVAD 77
Query: 464 QIHTLEG 484
++G
Sbjct: 78 PNPVIDG 84
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/67 (37%), Positives = 39/67 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG LAW ++R YF QFG + A ++ D++TG SKGYGF+ F +A A
Sbjct: 18 KVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDSATRAVAD 77
Query: 464 QIHTLEG 484
++G
Sbjct: 78 PNPVIDG 84
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/78 (32%), Positives = 46/78 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L++G ++W +LR+YFS +G V A ++ DR+TG ++G+GFI FA P ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 464 QIHTLEGFNLSVQLQIIR 517
H ++G + + + R
Sbjct: 66 DKHIIDGRTVEAKKAVPR 83
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R +++VG L ++ + + YF QFG + V++D +T +G+GFI F S A
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 455 TNKQIHTLEG 484
+K H L G
Sbjct: 168 LHKTFHELNG 177
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/78 (32%), Positives = 46/78 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L++G ++W +LR+YFS +G V A ++ DR+TG ++G+GFI FA P ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 464 QIHTLEGFNLSVQLQIIR 517
H ++G + + + R
Sbjct: 66 DKHIIDGRTVEAKKAVPR 83
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R +++VG L ++ + + YF QFG + V++D +T +G+GFI F S A
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 455 TNKQIHTLEG 484
+K H L G
Sbjct: 168 LHKTFHELNG 177
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 59.3 bits (137), Expect = 3e-09
Identities = 25/78 (32%), Positives = 46/78 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L++G ++W +LR+YFS +G V A ++ DR+TG ++G+GFI FA P ++
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADP-CVSERVIM 65
Query: 464 QIHTLEGFNLSVQLQIIR 517
H ++G + + + R
Sbjct: 66 DKHIIDGRTVEAKKAVPR 83
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/70 (32%), Positives = 37/70 (52%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R +++VG L ++ + + YF QFG + V++D +T +G+GFI F S A
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167
Query: 455 TNKQIHTLEG 484
+K H L G
Sbjct: 168 LHKTFHELNG 177
>At5g47620.2 68418.m05879 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 59.3 bits (137), Expect = 3e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
+ +L++G ++W +LR+YF FG V A ++ DR+TG ++G+GF+ FA P+ A
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/90 (30%), Positives = 48/90 (53%)
Frame = +2
Query: 242 NSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI 421
NS ++ + + +++VG LA +V + ++YF+QFG + V++D T +G+GFI
Sbjct: 93 NSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFI 152
Query: 422 EFASPSAAADATNKQIHTLEGFNLSVQLQI 511
+ S A K H L G + V+L +
Sbjct: 153 SYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182
>At5g47620.1 68418.m05878 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 431
Score = 59.3 bits (137), Expect = 3e-09
Identities = 22/56 (39%), Positives = 38/56 (67%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
+ +L++G ++W +LR+YF FG V A ++ DR+TG ++G+GF+ FA P+ A
Sbjct: 5 SCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/90 (30%), Positives = 48/90 (53%)
Frame = +2
Query: 242 NSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI 421
NS ++ + + +++VG LA +V + ++YF+QFG + V++D T +G+GFI
Sbjct: 93 NSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFI 152
Query: 422 EFASPSAAADATNKQIHTLEGFNLSVQLQI 511
+ S A K H L G + V+L +
Sbjct: 153 SYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 59.3 bits (137), Expect = 3e-09
Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Frame = +2
Query: 260 MASTARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 436
MAS++ R ++VGN+ + QLRE + GPV S R+V DR TG KGYGF E+
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60
Query: 437 SAAADA-TNKQIHTLEGFNLSV 499
A A N Q + + G L V
Sbjct: 61 ETALSARRNLQSYEINGRQLRV 82
>At5g47620.3 68418.m05877 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 358
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/90 (30%), Positives = 48/90 (53%)
Frame = +2
Query: 242 NSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI 421
NS ++ + + +++VG LA +V + ++YF+QFG + V++D T +G+GFI
Sbjct: 20 NSSLQGSPGPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFI 79
Query: 422 EFASPSAAADATNKQIHTLEGFNLSVQLQI 511
+ S A K H L G + V+L +
Sbjct: 80 SYDSEEAVDKVLQKTFHELNGKMVEVKLAV 109
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 58.0 bits (134), Expect = 6e-09
Identities = 23/76 (30%), Positives = 42/76 (55%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+ +++VG L T+ + R+YF +GPV +++D++T +G+GF+ F S A
Sbjct: 108 KTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSV 167
Query: 455 TNKQIHTLEGFNLSVQ 502
+K H L G + V+
Sbjct: 168 LHKTFHDLSGKQVEVK 183
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/78 (32%), Positives = 47/78 (60%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L+VG ++W +LRE+F+ +G V A V+ D+ TG +G+GF+ F+ PS D +
Sbjct: 7 KLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPS-VLDRVLQ 65
Query: 464 QIHTLEGFNLSVQLQIIR 517
+ H+++ + V+ + R
Sbjct: 66 EKHSIDTREVDVKRAMSR 83
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +2
Query: 260 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
MAS R +VG LAW R L F+Q+G V ++++ DR TG S+G+GF+ F
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 440 AAADA 454
A DA
Sbjct: 61 AMKDA 65
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +2
Query: 260 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
MAS R +VG LAW R L F+Q+G V ++++ DR TG S+G+GF+ F
Sbjct: 1 MASGDVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEK 60
Query: 440 AAADA 454
A DA
Sbjct: 61 AMKDA 65
>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 100
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/77 (35%), Positives = 41/77 (53%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R ++YV L W L YF +FG + A+VV D +T SKG+GF+ F +A A
Sbjct: 7 RETKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTFREVESATRA 66
Query: 455 TNKQIHTLEGFNLSVQL 505
HT++G ++ +L
Sbjct: 67 CENPNHTIDGRTVNCKL 83
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 57.2 bits (132), Expect = 1e-08
Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
+ +LY+G L+ L++ FS F V ARV+ ++ TG S+GYGF+ F S +A A
Sbjct: 30 STKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAI 89
Query: 458 NKQI-HTLEGFNLSVQL 505
+ L GFN+SV +
Sbjct: 90 SAMNGQELNGFNISVNV 106
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R +VG LAW L+ FSQFG V ++++ DR +G S+G+GF+ F A DA
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R +VG LAW L+ FSQFG V ++++ DR +G S+G+GF+ F A DA
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R +VG LAW L+ FSQFG V ++++ DR +G S+G+GF+ F A DA
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R +VG LAW L+ FSQFG V ++++ DR +G S+G+GF+ F A DA
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
+++L+VG L+W L++ F+ FG V A V+ DR TG S+G+GF+ F + D+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF----SCEDSA 89
Query: 458 NKQIHTLEGFNLS 496
N I ++G L+
Sbjct: 90 NNAIKEMDGKELN 102
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 57.2 bits (132), Expect = 1e-08
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
+++L+VG L+W L++ F+ FG V A V+ DR TG S+G+GF+ F + D+
Sbjct: 34 SSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSF----SCEDSA 89
Query: 458 NKQIHTLEGFNLS 496
N I ++G L+
Sbjct: 90 NNAIKEMDGKELN 102
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 57.2 bits (132), Expect = 1e-08
Identities = 25/78 (32%), Positives = 45/78 (57%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L++G ++W LREYFS FG V V+ +++TG +G+GF+ F+ P A D +
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDP-AVIDRVLQ 65
Query: 464 QIHTLEGFNLSVQLQIIR 517
H ++ ++ V+ + R
Sbjct: 66 DKHHIDNRDVDVKRAMSR 83
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/79 (29%), Positives = 41/79 (51%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
+ R +++VG L + + R YF +GPV A ++ D++T +G+GF+ F S +
Sbjct: 105 ANVRTKKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSV 164
Query: 446 ADATNKQIHTLEGFNLSVQ 502
+K H L G + V+
Sbjct: 165 DLVLHKTFHDLNGKQVEVK 183
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 57.2 bits (132), Expect = 1e-08
Identities = 27/84 (32%), Positives = 47/84 (55%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
+++++VG ++++ LRE FS++G V A+++ DR TG S+G+ F+ F S A++A
Sbjct: 33 SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92
Query: 458 NKQIHTLEGFNLSVQLQIIRYSEF 529
L G + V R S F
Sbjct: 93 QLDGQDLHGRRIRVNYATERGSGF 116
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG LAW ++++F QFG + A V+ D+++G SKGYGF+ F AA A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 464 QIHTLEG 484
++G
Sbjct: 74 ATPVIDG 80
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG LAW ++++F QFG + A V+ D+++G SKGYGF+ F AA A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 464 QIHTLEG 484
++G
Sbjct: 74 ATPVIDG 80
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/67 (35%), Positives = 39/67 (58%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG LAW ++++F QFG + A V+ D+++G SKGYGF+ F AA A
Sbjct: 14 KVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAARSACVD 73
Query: 464 QIHTLEG 484
++G
Sbjct: 74 ATPVIDG 80
>At3g06970.1 68416.m00828 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 272
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/51 (50%), Positives = 30/51 (58%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 427
R +++VGNL W LR YF QFG V A VV + G SKGYGFI F
Sbjct: 10 RVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITF 60
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 56.0 bits (129), Expect = 2e-08
Identities = 24/57 (42%), Positives = 36/57 (63%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R ++G LAWT R LR+ F ++G + A+VV D+ +G S+G+GFI F A +A
Sbjct: 8 RCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEA 64
>At5g53680.1 68418.m06668 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 169
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/67 (38%), Positives = 35/67 (52%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
++YVG L WT L +F +FG + VV DR T S+GYGF+ F +A A
Sbjct: 14 KIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKD 73
Query: 464 QIHTLEG 484
T+EG
Sbjct: 74 PNPTIEG 80
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Frame = +2
Query: 230 TPVGNSIIKVMASTA-RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSK 406
TP+G + V+ + A L++ N+ G ++L F FG V SA+V D++TG+SK
Sbjct: 331 TPLGIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSK 390
Query: 407 GYGFIEFASPSAAADATNKQI-HTLEGFNLSVQLQ 508
+GF+ + S +AA +A + L G L VQL+
Sbjct: 391 CFGFVSYDSQAAAQNAIDMMNGRHLGGKKLKVQLK 425
Score = 31.5 bits (68), Expect = 0.59
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
+ +L+VG + + QL F +F V ++ D+ T S+G F+ S A
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 458 N--KQIHTLEGFNLSVQLQ 508
N TL G N +Q++
Sbjct: 77 NACHNKKTLPGANSLLQVK 95
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 55.2 bits (127), Expect = 4e-08
Identities = 31/62 (50%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFS--QFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
+LYV NLAW LRE F+ F PV SARVVF G S GYGF+ FA+ A +A
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPV-SARVVFADPEGRSSGYGFVSFATREEAENAI 253
Query: 458 NK 463
K
Sbjct: 254 TK 255
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 460
+R++VG L+W V RQL F ++G + +++ R TG +G+GFI F A DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI- 70
Query: 461 KQIHTLE 481
K +H E
Sbjct: 71 KHMHGRE 77
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/67 (37%), Positives = 38/67 (56%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 460
+R++VG L+W V RQL F ++G + +++ R TG +G+GFI F A DA
Sbjct: 12 SRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI- 70
Query: 461 KQIHTLE 481
K +H E
Sbjct: 71 KHMHGRE 77
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 54.8 bits (126), Expect = 6e-08
Identities = 31/84 (36%), Positives = 49/84 (58%)
Frame = +2
Query: 212 DRRTLLTPVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRS 391
+R T L +K A +++ LYV NL ++ +L+E FS FG V S++V+ D +
Sbjct: 109 ERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN 168
Query: 392 TGLSKGYGFIEFASPSAAADATNK 463
G SKG GF+ FA+P A +A ++
Sbjct: 169 -GTSKGSGFVAFATPEEATEAMSQ 191
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 442
A+ + +YV NLA + L+ F ++G + SA VV G SKG+GF+ F +
Sbjct: 23 ANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSA-VVMKDGEGKSKGFGFVNFENADD 81
Query: 443 AADA 454
AA A
Sbjct: 82 AARA 85
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 54.8 bits (126), Expect = 6e-08
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
R +VG LAW + + F++FG V ++++ DR TG SKG+ F+ F + A ++
Sbjct: 45 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 104
Query: 464 QI-HTLEGFNLSVQ 502
L+G N++ Q
Sbjct: 105 MNGQELDGRNITAQ 118
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 54.4 bits (125), Expect = 7e-08
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS-AAADA 454
A R+YVGNL+ T LRE FS +G V A V+ DR T S+G+GF+ ++S S A A
Sbjct: 2 ATRVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAV 61
Query: 455 TNKQIHTLEGFNLSVQL 505
+ L G +SV+L
Sbjct: 62 SGMDGKELNGRRVSVKL 78
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 427
+LYVGNL + + QLR+ F FGPV+ ++ D TG KG+GFI+F
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPETGQCKGFGFIQF 313
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/35 (45%), Positives = 25/35 (71%)
Frame = +2
Query: 323 RQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 427
R + E+FS+ G V+ R++ DR++ SKG G+IEF
Sbjct: 182 RDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEF 216
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/73 (36%), Positives = 39/73 (53%)
Frame = +2
Query: 236 VGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYG 415
V N I +V +++V L W L E F Q+G ++ + VFD+ +G SKGYG
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 416 FIEFASPSAAADA 454
FI + S S A +A
Sbjct: 185 FILYKSRSGARNA 197
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
++YV N+ + ++L +FS+FG ++ + D+ TG KG+ + S +A A +
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 464 QIHTLEGFNLSVQLQI 511
T EG L Q I
Sbjct: 306 PHKTFEGHILHCQKAI 321
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/73 (36%), Positives = 39/73 (53%)
Frame = +2
Query: 236 VGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYG 415
V N I +V +++V L W L E F Q+G ++ + VFD+ +G SKGYG
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 416 FIEFASPSAAADA 454
FI + S S A +A
Sbjct: 185 FILYKSRSGARNA 197
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
++YV N+ + ++L +FS+FG ++ + D+ TG KG+ + S +A A +
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 464 QIHTLEGFNLSVQLQI 511
T EG L Q I
Sbjct: 306 PHKTFEGHILHCQKAI 321
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 54.0 bits (124), Expect = 1e-07
Identities = 27/73 (36%), Positives = 39/73 (53%)
Frame = +2
Query: 236 VGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYG 415
V N I +V +++V L W L E F Q+G ++ + VFD+ +G SKGYG
Sbjct: 125 VANRIREVADEDPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYG 184
Query: 416 FIEFASPSAAADA 454
FI + S S A +A
Sbjct: 185 FILYKSRSGARNA 197
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/76 (28%), Positives = 38/76 (50%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
++YV N+ + ++L +FS+FG ++ + D+ TG KG+ + S +A A +
Sbjct: 246 KIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGRPKGFCLFVYKSSESAKRALEE 305
Query: 464 QIHTLEGFNLSVQLQI 511
T EG L Q I
Sbjct: 306 PHKTFEGHILHCQKAI 321
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++ NL ++ H+ L E FS FGP+ S +V D S G SKGYGF+++ + AA A +K
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPS-GQSKGYGFVQYDTDEAAQGAIDK 192
Score = 54.0 bits (124), Expect = 1e-07
Identities = 30/81 (37%), Positives = 47/81 (58%)
Frame = +2
Query: 212 DRRTLLTPVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRS 391
+R T L +K A ++ + LYV NL +V +LRE+F+ FG + S +V+ D S
Sbjct: 304 ERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPS 363
Query: 392 TGLSKGYGFIEFASPSAAADA 454
G+S+G GF+ F++P A A
Sbjct: 364 -GVSRGSGFVAFSTPEEATRA 383
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/59 (47%), Positives = 37/59 (62%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
LYVG+L TV QL E F+Q G V S RV D +T S GYG++ +A+P A+ A N+
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 460
+YV NL+ ++ +L + F +FG S ++ D G SKG+GF+ F + AA A +
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRD-GEGKSKGFGFVNFENSDDAARAVD 282
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 52.8 bits (121), Expect = 2e-07
Identities = 30/72 (41%), Positives = 44/72 (61%)
Frame = +2
Query: 248 IIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 427
II+ M T + LYV NL +V + +L E FS+FG + S +V+ S G+SKG GF+EF
Sbjct: 213 IIRDM-KTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMV-HSNGISKGVGFVEF 270
Query: 428 ASPSAAADATNK 463
++ A+ A K
Sbjct: 271 STSEEASKAMLK 282
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/64 (42%), Positives = 39/64 (60%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
++V NL ++ ++QL + FS FG V S +V D S G+SKGYGF++F S + A N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS-GVSKGYGFVQFYSDLSVYTACNFH 91
Query: 467 IHTL 478
TL
Sbjct: 92 NGTL 95
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+YV NL T L+ F +FG + SA VV G S+ +GF+ F AA A K
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSA-VVMKDGEGKSRRFGFVNFEKAEAAVTAIEK 178
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 52.4 bits (120), Expect = 3e-07
Identities = 28/61 (45%), Positives = 36/61 (59%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
A RLYVGNL + LR+ F FG V+ +V D TGL KG+GF++FA A +A
Sbjct: 284 ARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRD-ETGLCKGFGFVQFARLEDARNAL 342
Query: 458 N 460
N
Sbjct: 343 N 343
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/47 (31%), Positives = 28/47 (59%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 427
++ +A R + E+FS+ G V+ R++ DR + S+G G++EF
Sbjct: 184 VFAYQIALRATERDVYEFFSRAGKVRDVRIIMDRISRRSRGIGYVEF 230
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = +2
Query: 239 GNSIIKVMASTARA-ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYG 415
G SI + + A A L++ N+ ++L F FG V SA+V D++TG+SK +G
Sbjct: 324 GTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 383
Query: 416 FIEFASPSAAADATNKQIH-TLEGFNLSVQLQ 508
FI + S +AA +A N L G L VQL+
Sbjct: 384 FISYDSQAAAQNAINTMNGCQLSGKKLKVQLK 415
Score = 34.3 bits (75), Expect = 0.083
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS---AAADA 454
+L+VG L V +++ FS++G ++ +++ S SKG F+++ S AA +A
Sbjct: 110 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQIL-RGSLQTSKGCLFLKYESKEQAVAAMEA 168
Query: 455 TNKQIHTLEGFNL 493
N + H +EG N+
Sbjct: 169 LNGR-HIMEGANV 180
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Frame = +2
Query: 239 GNSIIKVMASTARA-ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYG 415
G SI + + A A L++ N+ ++L F FG V SA+V D++TG+SK +G
Sbjct: 315 GTSIPSSLQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVDKATGISKCFG 374
Query: 416 FIEFASPSAAADATNKQIH-TLEGFNLSVQLQ 508
FI + S +AA +A N L G L VQL+
Sbjct: 375 FISYDSQAAAQNAINTMNGCQLSGKKLKVQLK 406
Score = 34.3 bits (75), Expect = 0.083
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS---AAADA 454
+L+VG L V +++ FS++G ++ +++ S SKG F+++ S AA +A
Sbjct: 101 KLFVGMLPKNVSETEVQSLFSEYGTIKDLQIL-RGSLQTSKGCLFLKYESKEQAVAAMEA 159
Query: 455 TNKQIHTLEGFNL 493
N + H +EG N+
Sbjct: 160 LNGR-HIMEGANV 171
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 52.0 bits (119), Expect = 4e-07
Identities = 28/83 (33%), Positives = 47/83 (56%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
A++L++G L++ + L E FS+ G V A++V DR + SKG+GF+ FAS AD
Sbjct: 33 ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFAS----ADEA 88
Query: 458 NKQIHTLEGFNLSVQLQIIRYSE 526
K + G L+ + + Y++
Sbjct: 89 QKALMEFNGQQLNGRTIFVDYAK 111
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/64 (37%), Positives = 40/64 (62%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 460
+R++VG L+ V R L FS+FG + +++ +R TG S+G+GFI FA A D +
Sbjct: 7 SRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFAD-RRAMDESI 65
Query: 461 KQIH 472
+++H
Sbjct: 66 REMH 69
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 52.0 bits (119), Expect = 4e-07
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = +2
Query: 242 NSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI 421
NS K + ++YVGNL W LR +FS+FG + S RV+ DR TG ++ + F+
Sbjct: 199 NSTPKKILMYESQHKVYVGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFL 258
Query: 422 EFAS 433
F S
Sbjct: 259 SFTS 262
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R LYV N+ + QL + F FG V S V + TG S+G G++ S ++A A
Sbjct: 106 RPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIA 165
Query: 455 TNKQIHTLEGFNLSVQLQIIRYS 523
I +L+G + + +RYS
Sbjct: 166 ----IASLDGTEVGGREMRVRYS 184
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.6 bits (118), Expect = 5e-07
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 236 VGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYG 415
+G++ K + LY+G L + L FS FG + A+V+ DR TGLSKGYG
Sbjct: 465 LGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524
Query: 416 FIEFASPSAAADATNKQI-HTLEGFNLSVQL 505
F+++A A A + EG L+V++
Sbjct: 525 FVKYADVQMANTAVQAMNGYRFEGRTLAVRI 555
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 51.6 bits (118), Expect = 5e-07
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 236 VGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYG 415
+G++ K + LY+G L + L FS FG + A+V+ DR TGLSKGYG
Sbjct: 465 LGSTPTKPPSKEYDETNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYG 524
Query: 416 FIEFASPSAAADATNKQI-HTLEGFNLSVQL 505
F+++A A A + EG L+V++
Sbjct: 525 FVKYADVQMANTAVQAMNGYRFEGRTLAVRI 555
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 51.6 bits (118), Expect = 5e-07
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
++ RLYVGNL +T+ +L + F + G V ++V+D+ T S+G+GF+ S A
Sbjct: 111 ASGEEGRLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEA 170
Query: 446 ADA 454
+A
Sbjct: 171 KEA 173
Score = 50.0 bits (114), Expect = 2e-06
Identities = 20/50 (40%), Positives = 33/50 (66%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 433
++Y GNL W + + L++ F V A+V+++R+TG S+G+GFI F S
Sbjct: 220 KVYAGNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFES 269
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/67 (38%), Positives = 41/67 (61%)
Frame = +2
Query: 272 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 451
A+ + +YV N+ V +LR++FSQ G + S +++ D G SKG+GF+ F++P A D
Sbjct: 301 AKVSNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAID 359
Query: 452 ATNKQIH 472
A K H
Sbjct: 360 AV-KTFH 365
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/56 (37%), Positives = 30/56 (53%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
LY+ NL V LRE F++FG + S + D + L +GY F+ F +P A A
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRA 257
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
++V NL +V + L++ F +FG + S +V G S+GYGF++F AA
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAA 165
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 51.2 bits (117), Expect = 7e-07
Identities = 24/63 (38%), Positives = 39/63 (61%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
ST + RL+V L+ + +L++ F+ FG + ARV+ DR +G SKG+GF+ +A+ A
Sbjct: 29 STLTSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDA 88
Query: 446 ADA 454
A
Sbjct: 89 EKA 91
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/73 (31%), Positives = 41/73 (56%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 442
+S + +L+VG ++W YF +FG V + ++ DR TG +G+GF+ FA SA
Sbjct: 60 SSMSSPGKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFAD-SA 118
Query: 443 AADATNKQIHTLE 481
A+ ++ H ++
Sbjct: 119 VAEKVLEEDHVID 131
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/71 (29%), Positives = 41/71 (57%)
Frame = +2
Query: 215 RRTLLTPVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRST 394
+RTL P G+ + A ++ +++VG L + +L+ YF +G + ++++D T
Sbjct: 138 KRTL--PRGDKDTDIKA-VSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHT 194
Query: 395 GLSKGYGFIEF 427
G S+G+GF+ F
Sbjct: 195 GRSRGFGFVTF 205
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 50.8 bits (116), Expect = 9e-07
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +2
Query: 185 KLWC*LQGFDRRTLLTPVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQ 364
+L+C R + L+P S + L+V L+ LR F+QFG V
Sbjct: 26 RLFC--SNASRFSFLSPQAESQTPARPQAEPSTNLFVSGLSKRTTSEGLRTAFAQFGEVA 83
Query: 365 SARVVFDRSTGLSKGYGFIEFAS 433
A+VV DR +G SKG+GF+ +A+
Sbjct: 84 DAKVVTDRVSGYSKGFGFVRYAT 106
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+L V + W + L++Y S+FG ++ V+ DRSTG S+G+G++ FAS A +A
Sbjct: 4 KLVVLGIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNA 60
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++VG L LR+YF +FG +Q A + D +G+GF+ FA + AD +
Sbjct: 241 KIFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAE-NGVADRVAR 299
Query: 464 QIHTLEGFNLSV 499
+ H + G +++
Sbjct: 300 RSHEICGQEVAI 311
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/59 (45%), Positives = 38/59 (64%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
LYV NL TV +LRE F++FG + S +V+ D S G SKG GF+ F++ S A+ N+
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNE 387
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/59 (38%), Positives = 34/59 (57%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
LYVG+L + V QL +YF++ V S RV D +T S GYG++ +++ A A K
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 442
A + L+V NL +V ++ L E FS G + S +V D G S+GYGF++F + +
Sbjct: 128 ARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTEDS 186
Query: 443 AADATNK 463
A +A K
Sbjct: 187 AKNAIEK 193
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/64 (34%), Positives = 34/64 (53%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 442
A + +YV NL+ +L+ F Q+G + SA V+ D G S+ +GF+ F +P
Sbjct: 219 ADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRD-GDGKSRCFGFVNFENPED 277
Query: 443 AADA 454
AA A
Sbjct: 278 AARA 281
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = +2
Query: 269 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 448
T R +YV NL +G +LR+ F +FG + SA V+ D+S G S+ +GF+ F AAA
Sbjct: 225 TPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQS-GNSRCFGFVNFECTEAAA 283
Query: 449 DATNK 463
A K
Sbjct: 284 SAVEK 288
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/64 (34%), Positives = 43/64 (67%)
Frame = +2
Query: 272 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 451
++ A LY+ NL +V +L+E FS++G V S++V+ + G+S+G+GF+ +++P A
Sbjct: 329 SQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALR 387
Query: 452 ATNK 463
A ++
Sbjct: 388 ALSE 391
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/59 (38%), Positives = 36/59 (61%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++ NL ++ ++ L E FS FG + S +V D TG SKGYGF++F +A A +K
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDK 195
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
+A LY+G + ++ +FSQFG V+ RV ++ TG SK +GFI+F P A
Sbjct: 58 KATVLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVA 114
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/70 (30%), Positives = 36/70 (51%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+ +++VG LAW + ++F ++G + A ++ D+ T SKGYGF+ F AA A
Sbjct: 15 KLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRA 74
Query: 455 TNKQIHTLEG 484
+ G
Sbjct: 75 CEDSTPIING 84
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQ-FGPVQSARVVFDRSTGLSKGYGFIEFA 430
++VG+LA V L + F +G V+ A+VV DR+TG SKGYGF+ FA
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFA 204
Score = 47.6 bits (108), Expect = 8e-06
Identities = 23/60 (38%), Positives = 35/60 (58%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
S + L++G+L + + F+Q G SA+V+ ++ TG S+GYGFIEF S S A
Sbjct: 55 SASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVA 114
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+++V L W L + F Q+G ++ + V D+ +G SKGYGFI F S S A +A
Sbjct: 129 KIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGARNA 185
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/67 (29%), Positives = 38/67 (56%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
++YV N++ + ++L E+FS+FG ++ + D++TG KG+ + S +A A +
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 464 QIHTLEG 484
T EG
Sbjct: 288 PHKTFEG 294
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/57 (38%), Positives = 39/57 (68%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
+ + LY+ NL +V +L+E FS++G V S +V+ + S GLS+G+GF+ +++P A
Sbjct: 326 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMN-SQGLSRGFGFVAYSNPEEA 381
Score = 47.2 bits (107), Expect = 1e-05
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+YV NL + +L++ F ++G + SA V+ D+S G S+ +GF+ F SP AAA A K
Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQS-GNSRSFGFVNFVSPEAAAVAVEK 284
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+++ NL ++ ++ L E FS FG + S +V D G SKGYGF++F A A +K
Sbjct: 134 VFIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDK 191
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
LYVG+L +V L + F+Q PV + RV D T S GY ++ FA+P A+ A
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRA 101
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
R++VG L + Q+RE FGP++ +V DR TG SKGY F + PS
Sbjct: 376 RIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPS 427
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 48.8 bits (111), Expect = 4e-06
Identities = 27/69 (39%), Positives = 38/69 (55%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
L V NL LR+ F QFGPV+ + D TG +G+GF++F P+ AADA
Sbjct: 38 LLVRNLRHDCRQEDLRKSFEQFGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAK--- 94
Query: 467 IHTLEGFNL 493
H ++G+ L
Sbjct: 95 -HHMDGYLL 102
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/88 (29%), Positives = 46/88 (52%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L+VG +A L++YFS++G V A V ++ TG +G+GF+ FA+ A +
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL-R 65
Query: 464 QIHTLEGFNLSVQLQIIRYSEF*LVFKM 547
H + G + V+ I ++ + F M
Sbjct: 66 DTHFILGKPVDVRKAIRKHELYQQPFSM 93
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/81 (24%), Positives = 36/81 (44%)
Frame = +2
Query: 269 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 448
T+R +++VG L+ + + YF +FG V+ D T +G+GF+ + S +
Sbjct: 116 TSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVE 175
Query: 449 DATNKQIHTLEGFNLSVQLQI 511
H L + V+ I
Sbjct: 176 VVMQSNFHELSDKRVEVKRAI 196
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 48.4 bits (110), Expect = 5e-06
Identities = 22/58 (37%), Positives = 36/58 (62%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
++++VG L+ + L+E F FG + A VV DR +GLS+G+GF+ + S A +A
Sbjct: 36 SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 48.0 bits (109), Expect = 6e-06
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
L++G+L + V L FSQ G + S +V+ ++ TG +GYGFIEF S +AA
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAA 78
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFS-QFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
++VG+LA V L+E F + V+ A+VV D STG SKGYGF++FA S
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEES 169
Score = 31.5 bits (68), Expect = 0.59
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
S + V NL V +L++ FSQ G V ++ +KGYG+++F + +A
Sbjct: 232 SDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIP------ATKGYGYVQFKTRPSA 285
Query: 446 ADATNK 463
+A +
Sbjct: 286 EEAVQR 291
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 48.0 bits (109), Expect = 6e-06
Identities = 22/57 (38%), Positives = 32/57 (56%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
RL+V NL +T +L E+FS FG + +V D+ T S+G +I + P AA A
Sbjct: 262 RLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARA 318
Score = 43.6 bits (98), Expect = 1e-04
Identities = 21/57 (36%), Positives = 35/57 (61%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+L+V N+A+ R+LR+ FS FG ++S R+ ++ G GY F+EF + A +A
Sbjct: 670 KLHVKNIAFEATKRELRQLFSPFGQIKSMRLP-KKNIGQYAGYAFVEFVTKQEALNA 725
Score = 30.3 bits (65), Expect = 1.4
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQF---GPVQSARVVFDRSTG--LSKGYGFIEFASPSAAAD 451
L V NL++ L+++F++ G + S ++ + LS GYGF+EF S A
Sbjct: 571 LNVKNLSFKTTDEGLKKHFTKLVKQGKILSVTIIKHKKNEKYLSSGYGFVEFDSVETATS 630
Query: 452 ATNKQIHTLEGFNLSVQLQIIRYSE 526
L+G L I+R+ E
Sbjct: 631 V----YRDLQGTVLDGHALILRFCE 651
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQ-FGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
++VG+LA V L E F + V+ A+VV DR+TG SKGYGF+ FA S
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADES 226
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
S L++G+L + L F G +A+V+ ++ G S+GYGFIEF + + A
Sbjct: 75 SAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATA 134
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 47.6 bits (108), Expect = 8e-06
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
S+ A R+Y+GN+ TV + QL + + G V+ +V++D+ +G S+ +GF S A
Sbjct: 71 SSEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDA 130
Query: 446 ADATNK-QIHTLEGFNLSVQL 505
K +T+EG + V +
Sbjct: 131 NAVVEKLNGNTVEGREIKVNI 151
Score = 45.6 bits (103), Expect = 3e-05
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP---SAAADA 454
++YVGNLA TV L FS+ G V SA+V T S G+GF+ F+S AA A
Sbjct: 178 KVYVGNLAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVA 237
Query: 455 TNKQIHTLEGFNLSV 499
N + LEG + V
Sbjct: 238 LNNSL--LEGQKIRV 250
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/69 (39%), Positives = 37/69 (53%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
L V NL LR F QFGPV+ + D TG +G+GFI+F P+ AA+A
Sbjct: 39 LLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAK--- 95
Query: 467 IHTLEGFNL 493
H ++G+ L
Sbjct: 96 -HQMDGYLL 103
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGP-VQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
++VG+LA V L E FS+ P V++A+VV D +TG SKGYGF+ F + A
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Score = 34.3 bits (75), Expect = 0.083
Identities = 20/66 (30%), Positives = 35/66 (53%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
++VG L +V L++ FS+FG + S ++ + KG GF++F + A +A K
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKL 361
Query: 467 IHTLEG 484
T+ G
Sbjct: 362 NGTVIG 367
Score = 31.1 bits (67), Expect = 0.78
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFS--QFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
++VG+L + L F+ + + S +V+ ++ G S+GYGF+EF S A
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVA 159
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 46.8 bits (106), Expect = 1e-05
Identities = 28/120 (23%), Positives = 55/120 (45%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
A +++VG LA + ++F ++G + + ++ DR TG +G+GF+ +A S+ D
Sbjct: 41 AGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYAD-SSVVDKV 99
Query: 458 NKQIHTLEGFNLSVQLQIIRYSEF*LVFKMAEALPXYPDSDFSDEDQSPLDSLFNKAADH 637
+ H + G + ++ I R S FK + S D++ F + +H
Sbjct: 100 IQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGGIPSSVDDDEFKEFFMQFGELKEH 159
Score = 46.8 bits (106), Expect = 1e-05
Identities = 17/53 (32%), Positives = 35/53 (66%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 433
+ +++VG + +V + +E+F QFG ++ +++ D STG S+G+GF+ + S
Sbjct: 128 KTKKIFVGGIPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYES 180
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L++ LA LR FS +G ++ A V+ D+ TG SKGYGF+ F A A +
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 464 QIHTLEG 484
++G
Sbjct: 136 PSKKIDG 142
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/97 (22%), Positives = 45/97 (46%)
Frame = +2
Query: 221 TLLTPVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGL 400
T L GN + ++YV N+ + + +L +F +G V+ + FD+ TG
Sbjct: 147 TQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGK 206
Query: 401 SKGYGFIEFASPSAAADATNKQIHTLEGFNLSVQLQI 511
S+G+ + + A A + ++G +L+ +L +
Sbjct: 207 SRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/67 (34%), Positives = 35/67 (52%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
+L++ LA LR FS +G ++ A V+ D+ TG SKGYGF+ F A A +
Sbjct: 76 KLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGALLALKE 135
Query: 464 QIHTLEG 484
++G
Sbjct: 136 PSKKIDG 142
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/97 (22%), Positives = 45/97 (46%)
Frame = +2
Query: 221 TLLTPVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGL 400
T L GN + ++YV N+ + + +L +F +G V+ + FD+ TG
Sbjct: 147 TQLAASGNQGTGSQIADISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGK 206
Query: 401 SKGYGFIEFASPSAAADATNKQIHTLEGFNLSVQLQI 511
S+G+ + + A A + ++G +L+ +L +
Sbjct: 207 SRGFALFVYKTAEGAQAALADPVKVIDGKHLNCKLAV 243
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +2
Query: 269 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 448
T+ ++VG+L+ V L + FS F ARV++D+ TG S+G+GF+ F + A
Sbjct: 140 TSSHFNIFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 199
Query: 449 DATNK 463
A N+
Sbjct: 200 TAINE 204
Score = 34.7 bits (76), Expect = 0.063
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +2
Query: 233 PVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVV-FDRSTGLSKG 409
P GN ST R+ +YVGN+ V L+E F+ GPV+S++++ D+S+
Sbjct: 45 PSGNLPPGFDPSTCRS--VYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS----- 97
Query: 410 YGFIEFASPSAAA 448
YGF+ + +AA
Sbjct: 98 YGFVHYFDRRSAA 110
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF-ASPSAA 445
+YVGNLA V L YF G A V+ + KG+GF+ + P AA
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALG----AGVIEEVRVQRDKGFGFVRYNTHPEAA 316
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/80 (26%), Positives = 41/80 (51%)
Frame = +2
Query: 272 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 451
A ++++G L + ++F ++G + + ++ DR TG +G+GFI FA PS D
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS-VVD 74
Query: 452 ATNKQIHTLEGFNLSVQLQI 511
+ H + G + ++ I
Sbjct: 75 KVIEDTHVINGKQVEIKRTI 94
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+ +++VG + TV +L+++F+++G V +V+ D T S+G+GF+ F S +
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Query: 455 TNK 463
+K
Sbjct: 167 LSK 169
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/80 (26%), Positives = 41/80 (51%)
Frame = +2
Query: 272 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 451
A ++++G L + ++F ++G + + ++ DR TG +G+GFI FA PS D
Sbjct: 16 ASPGKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPS-VVD 74
Query: 452 ATNKQIHTLEGFNLSVQLQI 511
+ H + G + ++ I
Sbjct: 75 KVIEDTHVINGKQVEIKRTI 94
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+ +++VG + TV +L+++F+++G V +V+ D T S+G+GF+ F S +
Sbjct: 107 KTKKIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDEL 166
Query: 455 TNK 463
+K
Sbjct: 167 LSK 169
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 46.8 bits (106), Expect = 1e-05
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
++V W L+ F +G ++ VV D+ TG KGYGF+ F + A +A +
Sbjct: 410 IFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAREALKR 468
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/65 (35%), Positives = 37/65 (56%)
Frame = +2
Query: 269 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 448
T+ ++VG+L+ V L + FS F ARV++D+ TG S+G+GF+ F + A
Sbjct: 144 TSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 203
Query: 449 DATNK 463
A N+
Sbjct: 204 TAINE 208
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 233 PVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVV-FDRSTGLSKG 409
P GN +T R+ +Y GN+ V L+E F+ GP++S +++ D+S+
Sbjct: 49 PSGNLPPGFDPTTCRS--VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----- 101
Query: 410 YGFIEFASPSAAADA 454
YGF+ + A+ A
Sbjct: 102 YGFVHYFDRRCASMA 116
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 257 VMASTARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 433
V +TA R L++G+L + + L F+ G + SA+V+ ++ TG +GYGFIEFAS
Sbjct: 53 VQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFAS 112
Query: 434 PSAA 445
+AA
Sbjct: 113 HAAA 116
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYF-SQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
++VG+LA V L E F + + V+ A+VV DR TG +KGYGF+ F+ S
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
++VG L +V L+ FSQ+G + ++ K GF++F+ S A +A
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI------PAGKRCGFVQFSEKSCAEEA 312
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 46.8 bits (106), Expect = 1e-05
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +2
Query: 257 VMASTARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 433
V +TA R L++G+L + + L F+ G + SA+V+ ++ TG +GYGFIEFAS
Sbjct: 53 VQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFAS 112
Query: 434 PSAA 445
+AA
Sbjct: 113 HAAA 116
Score = 43.6 bits (98), Expect = 1e-04
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYF-SQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
++VG+LA V L E F + + V+ A+VV DR TG +KGYGF+ F+ S
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDES 208
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/69 (36%), Positives = 39/69 (56%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
+A+L+V L+ + LR+ FS FG ++ AR++ D T KG+GFI F S D
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDS----EDDA 61
Query: 458 NKQIHTLEG 484
K + +L+G
Sbjct: 62 RKALKSLDG 70
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGP-VQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
++VG+L+ V L E FS+ P V++A+VV D +TG SKGYGF+ F + A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Score = 34.7 bits (76), Expect = 0.063
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGP--VQSARVVFDRSTGLSKGYGFIEFASPSAA 445
++VG+L + L F+ + S +V+ +++ GLS+GYGF+EF S A
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGP-VQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
++VG+L+ V L E FS+ P V++A+VV D +TG SKGYGF+ F + A
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Score = 34.7 bits (76), Expect = 0.063
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGP--VQSARVVFDRSTGLSKGYGFIEFASPSAA 445
++VG+L + L F+ + S +V+ +++ GLS+GYGF+EF S A
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVA 157
Score = 33.1 bits (72), Expect = 0.19
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
++VG L +V L++ F++FG + S ++ + KG GF++F + A +A K
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKI------PVGKGCGFVQFVNRPNAEEALEKL 359
Query: 467 IHTLEG 484
T+ G
Sbjct: 360 NGTVIG 365
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 46.0 bits (104), Expect = 3e-05
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
RL+ G+L V L + F++F A+V+ D+ TG +KGYGF+ F +P+ A A
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA 194
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
++V L W H L+ F +G + VV D+ TG +KG+GF+ F + A A
Sbjct: 165 IFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGARAA 220
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/67 (31%), Positives = 37/67 (55%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 460
+ +++G L VG LR+ + G + R++ DR +G SKGY F+ F + A A
Sbjct: 116 SEVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAI- 174
Query: 461 KQIHTLE 481
+++H+ E
Sbjct: 175 EELHSKE 181
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/55 (40%), Positives = 33/55 (60%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 451
L+VG+L + L FS G V S +V+ ++ T S+GYGF+EF S +AA +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Score = 44.4 bits (100), Expect = 8e-05
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGP-VQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
++VG+L+ V L E FS P V+SA+VV D +TG SKGYGF+ F + + A
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/70 (35%), Positives = 36/70 (51%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 460
A ++VG + V LR+ FSQFG V S ++ + KG GF++FA +A DA
Sbjct: 321 ATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI------PVGKGCGFVQFADRKSAEDAIE 374
Query: 461 KQIHTLEGFN 490
T+ G N
Sbjct: 375 SLNGTVIGKN 384
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 45.2 bits (102), Expect = 4e-05
Identities = 26/65 (40%), Positives = 34/65 (52%)
Frame = +2
Query: 260 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
MA + +YV NL TV L FSQ+G V S V+ D G S+G+GF+ F +P
Sbjct: 195 MAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRD-GMGRSRGFGFVNFCNPE 253
Query: 440 AAADA 454
A A
Sbjct: 254 NAKKA 258
Score = 42.7 bits (96), Expect = 2e-04
Identities = 26/84 (30%), Positives = 47/84 (55%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R + LYV NL+ ++ +LRE F +G + SA+V+ G SKG+GF+ F++ +
Sbjct: 302 RWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMC-HENGRSKGFGFVCFSN----CEE 356
Query: 455 TNKQIHTLEGFNLSVQLQIIRYSE 526
+ + L GF + + ++R +E
Sbjct: 357 SKQAKRYLNGFLVDGKPIVVRVAE 380
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
A LYV NL ++ L F FG + S +VV G SKG+GF++F + +A A
Sbjct: 112 ANLYVKNLDSSITSSCLERMFCPFGSILSCKVV--EENGQSKGFGFVQFDTEQSAVSA 167
>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 407
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
L+V +L+ V L+E F FG V + DR+ L +G+G++EF A ADA Q
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF---KARADAEKAQ 156
Query: 467 IH 472
++
Sbjct: 157 LY 158
>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
(SR45) similar to arginine/serine-rich protein
GI:6601502 from [Arabidopsis thaliana]
Length = 414
Score = 45.2 bits (102), Expect = 4e-05
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
L+V +L+ V L+E F FG V + DR+ L +G+G++EF A ADA Q
Sbjct: 100 LHVDSLSRNVNEAHLKEIFGNFGEVIHVEIAMDRAVNLPRGHGYVEF---KARADAEKAQ 156
Query: 467 IH 472
++
Sbjct: 157 LY 158
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/57 (40%), Positives = 29/57 (50%)
Frame = +2
Query: 293 VGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
V NL+ L E F FG V V D+ TG+S+G+GF+ F S A A NK
Sbjct: 217 VTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKTGVSRGFGFVNFVSREDAQRAINK 273
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
L+VG+L + L FS V S +V+ ++ T S+GYGF+EF S SAA +A
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEA 176
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFS-QFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
++VG+LA V L E F+ ++ V+ A+VV D +TG SKGYGF+ F + + A
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Score = 34.7 bits (76), Expect = 0.063
Identities = 22/68 (32%), Positives = 34/68 (50%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
++VG L V L + FS FG V S ++ + KG GF++FA+ +A +A
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKI------PVGKGCGFVQFANRQSAEEAIGNL 382
Query: 467 IHTLEGFN 490
T+ G N
Sbjct: 383 NGTVIGKN 390
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +2
Query: 230 TPVGNSIIKVMASTA-RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSK 406
TP+G + V+ + A L++ N+ G ++L F FG V SA+V D++TG+SK
Sbjct: 330 TPLGIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSK 389
Query: 407 GYGFIEF 427
+G + F
Sbjct: 390 CFGKLSF 396
Score = 31.5 bits (68), Expect = 0.59
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
+ +L+VG + + QL F +F V ++ D+ T S+G F+ S A
Sbjct: 17 SVKLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLV 76
Query: 458 N--KQIHTLEGFNLSVQLQ 508
N TL G N +Q++
Sbjct: 77 NACHNKKTLPGANSLLQVK 95
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 236 VGNSIIKVMASTARA----ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLS 403
+G+SI + A +++V L W L F +G ++ VV D++TG +
Sbjct: 85 IGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKA 144
Query: 404 KGYGFIEFASPSAAADA 454
KG+GF+ F + A +A
Sbjct: 145 KGFGFVMFKTRKGAKEA 161
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 44.4 bits (100), Expect = 8e-05
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +2
Query: 236 VGNSIIKVMASTARA----ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLS 403
+G+SI + A +++V L W L F +G ++ VV D++TG +
Sbjct: 85 IGSSIYSAVVEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKA 144
Query: 404 KGYGFIEFASPSAAADA 454
KG+GF+ F + A +A
Sbjct: 145 KGFGFVMFKTRKGAKEA 161
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/64 (34%), Positives = 35/64 (54%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
L+VG L+ LRE S++G +++ R+V TG S+GYGF+E+ + A
Sbjct: 66 LFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFVEYETEKEMLRAYEDA 125
Query: 467 IHTL 478
H+L
Sbjct: 126 HHSL 129
>At4g16280.3 68417.m02471 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 533
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +2
Query: 260 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
++ + +L+VG++ T ++R YF Q G V ++ D+ TG +G F+++A+ S
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT-S 171
Query: 440 AAADATNKQIH---TLEGFNLSVQLQIIRYSE 526
AD + +H TL G VQ +RY++
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQ---VRYAD 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN- 460
+L+VG+L +++ E F QFG V+ ++ D S+G GF++++S A A +
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDG 270
Query: 461 -KQIHTLEGFNLSVQLQIIRYSE 526
+T+ G N Q I+R++E
Sbjct: 271 LNGTYTMRGCN---QPLIVRFAE 290
>At4g16280.2 68417.m02470 flowering time control protein / FCA gamma
(FCA) identical to SP|O04425 Flowering time control
protein FCA {Arabidopsis thaliana}; four alternative
splice variants, one splicing isoform contains a
non-consensus CA donor splice site, based on cDNA:
gi:2204090
Length = 747
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Frame = +2
Query: 260 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
++ + +L+VG++ T ++R YF Q G V ++ D+ TG +G F+++A+ S
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYAT-S 171
Query: 440 AAADATNKQIH---TLEGFNLSVQLQIIRYSE 526
AD + +H TL G VQ +RY++
Sbjct: 172 KDADRAIRALHNQITLPGGTGPVQ---VRYAD 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN- 460
+L+VG+L +++ E F QFG V+ ++ D S+G GF++++S A A +
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDG 270
Query: 461 -KQIHTLEGFNLSVQLQIIRYSE 526
+T+ G N Q I+R++E
Sbjct: 271 LNGTYTMRGCN---QPLIVRFAE 290
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 43.6 bits (98), Expect = 1e-04
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVV-FDRSTGLSKGYGFIEFASPSAAADATNK 463
L+ GNL++ + + +F + G V R+ FD G KGYG IEFASP A A
Sbjct: 386 LFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFD--DGSFKGYGHIEFASPEEAQKALEM 443
Query: 464 QIHTLEGFNLSVQL 505
L G ++ + L
Sbjct: 444 NGKLLLGRDVRLDL 457
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Frame = +2
Query: 272 ARAARLYVGNLAWTVGH----RQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 433
+++ +YV + ++G ++LR +FS+ G V V DR TG S+G+ +I+ S
Sbjct: 476 SQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533
>At2g21690.1 68415.m02580 RNA-binding protein, putative similar to
Glycine-rich RNA-binding protein from {Sinapis alba}
SP|P49311, {Brassica napus} SP|Q05966, {Arabidopsis
thaliana} SP|Q03251; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 117
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/55 (32%), Positives = 31/55 (56%)
Frame = +2
Query: 290 YVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+V L + L + FS+FG V +++++DR TG S+ +GF+ F + DA
Sbjct: 10 FVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTDA 64
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 43.2 bits (97), Expect = 2e-04
Identities = 26/92 (28%), Positives = 47/92 (51%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 460
A L+VG+L W +L ++G V+ + ++++G SKGY +EF P AA+ +
Sbjct: 234 AFLFVGDLHWWTTDAELEAELCKYGAVKEVKFFDEKASGKSKGYCQVEFYDPVAASACKD 293
Query: 461 KQIHTLEGFNLSVQLQIIRYSEF*LVFKMAEA 556
L G+ + + ++ Y+ V +M EA
Sbjct: 294 ----ALNGYPFNGRPCVVEYASPYSVKRMGEA 321
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R+Y+GNLAW R +R+ FS + S R+ ++ TG KGY ++F + A A
Sbjct: 263 RVYIGNLAWDTTERDIRKLFSDC-VINSVRLGKNKETGEFKGYAHVDFKDSVSVAIA 318
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+LYVG + + ++R YF G + G G FI F + A A
Sbjct: 162 KLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRA 218
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/57 (38%), Positives = 28/57 (49%)
Frame = +2
Query: 293 VGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
V NL+ L E F FG V V D+ T +S+G+GF+ F S A A NK
Sbjct: 178 VTNLSEDTRGPDLMELFRPFGAVTRCHVAIDQKTSMSRGFGFVSFVSREDAQRAINK 234
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+ +L++ L++ + LR F FG + +++ D+ + SKGY F+E+ + AA A
Sbjct: 280 KTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTA 339
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/55 (43%), Positives = 29/55 (52%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
A +YVG L + L E F Q GPV + V DR T L + YGFIE+ S A
Sbjct: 25 ATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDA 79
Score = 42.7 bits (96), Expect = 2e-04
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQS-ARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
A L++GNL V + L + FS FG + S +++ D TG S+G+GFI + S +A+
Sbjct: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDS----FEAS 167
Query: 458 NKQIHTLEGFNLSVQLQIIRYS 523
+ I ++ G LS + + Y+
Sbjct: 168 DAAIESMTGQYLSNRQITVSYA 189
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/56 (37%), Positives = 33/56 (58%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+YVG L + + +R FS +G V + ++V DRS K YGF+ F++ +A DA
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSV-RGKCYGFVTFSNRRSADDA 63
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/90 (26%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Frame = +2
Query: 218 RTLLTPVGNSIIKVMASTARA-ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRST 394
RT+ G+ + +S + + L+V + +V +L++ FS+FG V + +++ + T
Sbjct: 36 RTISCVAGDDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERT 95
Query: 395 GLSKGYGFIEFAS---PSAAADATNKQIHT 475
S GYG++ F S +A +A N ++H+
Sbjct: 96 RQSLGYGYVWFNSKEDAQSAVEAMNGKVHS 125
>At1g13190.1 68414.m01529 RNA recognition motif (RRM)-containing
protein
Length = 573
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/54 (37%), Positives = 30/54 (55%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 448
L+VG L W ++ SQ+G V+ + +R +G SKGY +EF +AAA
Sbjct: 204 LFVGELHWWTTDAEIESVLSQYGRVKEIKFFDERVSGKSKGYCQVEFYDSAAAA 257
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 41.5 bits (93), Expect = 6e-04
Identities = 22/87 (25%), Positives = 46/87 (52%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
S +A + V L+ L + +++GP+ RV+ ++++G+S+G+ FI+F + AA
Sbjct: 293 SATPSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFAFIDFPTVDAA 352
Query: 446 ADATNKQIHTLEGFNLSVQLQIIRYSE 526
++ H +G L + + YS+
Sbjct: 353 RTMMDRIEH--DGIVLDGRKLMFHYSQ 377
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 41.5 bits (93), Expect = 6e-04
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS-PSAAADATNK 463
LYV NL +++ + + FS FG V V+ DR T S+G F+ + S AA A +
Sbjct: 59 LYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSM 118
Query: 464 QIHTLEGFNLSVQL 505
L G L+V +
Sbjct: 119 DAKILNGRKLTVSI 132
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +2
Query: 269 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQS----ARVVFDRSTGLSKGYGFIEFASP 436
T+ ++VG+L+ V L + FS F S ARV++D+ TG S+G+GF+ F +
Sbjct: 144 TSSHFNIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMWDQKTGRSRGFGFVSFRNQ 203
Query: 437 SAAADATNK 463
A A N+
Sbjct: 204 QDAQTAINE 212
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2
Query: 233 PVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVV-FDRSTGLSKG 409
P GN +T R+ +Y GN+ V L+E F+ GP++S +++ D+S+
Sbjct: 49 PSGNLPPGFDPTTCRS--VYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS----- 101
Query: 410 YGFIEFASPSAAADA 454
YGF+ + A+ A
Sbjct: 102 YGFVHYFDRRCASMA 116
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/65 (32%), Positives = 36/65 (55%)
Frame = +2
Query: 269 TARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAA 448
T+ ++VG+L+ V L FS + ARV++D+ TG S+G+GF+ F + A
Sbjct: 135 TSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 194
Query: 449 DATNK 463
A ++
Sbjct: 195 TAIDE 199
Score = 31.5 bits (68), Expect = 0.59
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +2
Query: 233 PVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGY 412
P GN ST R+ +YVGN+ V L+E F+ GPV+S +++ + Y
Sbjct: 40 PSGNLPPGFDPSTCRS--VYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS----SY 93
Query: 413 GFIEF 427
GF+ +
Sbjct: 94 GFVHY 98
Score = 31.5 bits (68), Expect = 0.59
Identities = 19/61 (31%), Positives = 30/61 (49%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
+ A+ +YVGNLA V L +F G A V+ + KG+GF+ +++ A
Sbjct: 255 NNAQYTTVYVGNLAPEVSQVDLHRHFHSLG----AGVIEEVRVQRDKGFGFVRYSTHVEA 310
Query: 446 A 448
A
Sbjct: 311 A 311
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
A+++ V NL ++ L+ FS FG + +++ D + SKGY FI+F S A
Sbjct: 39 ASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDA 94
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGF 418
R++VG L + Q+RE FG ++ +V DR TG SKGY F
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGF 418
R++VG L + Q+RE FG ++ +V DR TG SKGY F
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGF 418
R++VG L + Q+RE FG ++ +V DR TG SKGY F
Sbjct: 360 RIFVGGLPYYFTESQVRELLESFGGLKGFDLVKDRETGNSKGYAF 404
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 269 TARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
++R++R +YVGNL + R++ + FS++GPV + + GY F+EF A
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDA 58
Query: 446 ADAT-NKQIHTLEGFNLSVQL 505
DA + + +G +L V+L
Sbjct: 59 DDAIYGRDGYDFDGHHLRVEL 79
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 40.7 bits (91), Expect = 0.001
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 269 TARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
++R++R +YVGNL + R++ + FS++GPV + + GY F+EF A
Sbjct: 2 SSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDL---KIPPRPPGYAFVEFEDARDA 58
Query: 446 ADAT-NKQIHTLEGFNLSVQL 505
DA + + +G +L V+L
Sbjct: 59 DDAIYGRDGYDFDGHHLRVEL 79
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYF-SQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
L+V NLA+ + L+E+F + G V S V+F + S GYGF+ F + A A
Sbjct: 191 LFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAA 247
Score = 34.7 bits (76), Expect = 0.063
Identities = 21/71 (29%), Positives = 32/71 (45%)
Frame = +2
Query: 242 NSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI 421
+S +V+ RL N+ WT +R F ++G V + + ++G FI
Sbjct: 81 SSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKER-NRGLVFI 139
Query: 422 EFASPSAAADA 454
E ASP AA A
Sbjct: 140 EMASPEEAATA 150
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +2
Query: 251 IKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFA 430
++++A + +Y+G + L+ + G V R++ ++ +G KGY F+ F
Sbjct: 82 VELLALPPHGSEVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFR 141
Query: 431 SPSAAADA 454
S AA+A
Sbjct: 142 SKDLAAEA 149
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 427
A +A +YVG + + + L FSQ+G + ++ D+ TG SKG+ F+ +
Sbjct: 30 AKYKNSAYVYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAY 84
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 269 TARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
++R++R +YVGNL + R++ + FS++GPV + + GY F+EF A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDA 58
Query: 446 ADATN-KQIHTLEGFNLSVQL 505
DA + + + +G L V+L
Sbjct: 59 EDAIHGRDGYDFDGHRLRVEL 79
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 269 TARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
++R++R +YVGNL + R++ + FS++GPV + + GY F+EF A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDA 58
Query: 446 ADATN-KQIHTLEGFNLSVQL 505
DA + + + +G L V+L
Sbjct: 59 EDAIHGRDGYDFDGHRLRVEL 79
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 269 TARAAR-LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
++R++R +YVGNL + R++ + FS++GPV + + GY F+EF A
Sbjct: 2 SSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDL---KVPPRPPGYAFVEFDDARDA 58
Query: 446 ADATN-KQIHTLEGFNLSVQL 505
DA + + + +G L V+L
Sbjct: 59 EDAIHGRDGYDFDGHRLRVEL 79
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 218 RTLLTPVGNSIIKVMASTARA-ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRST 394
RT+ G+ + +S + + L+V + +V +L++ FS+FG V + +++ + T
Sbjct: 55 RTISCVAGDDETREASSLPSSISSLFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERT 114
Query: 395 GLSKGYGFIEFASPSAAADA 454
S GYG++ F S A A
Sbjct: 115 RQSLGYGYVWFNSKEDAQSA 134
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
L + NL LR+ F +FGP++ + + TG +G+GF+++ AA+A +
Sbjct: 49 LLIRNLPLDARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRM 108
Query: 467 IHTLEG 484
H + G
Sbjct: 109 NHKVIG 114
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 272 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 451
A + ++V N+ + L +F++FG V A +V D +TG G +IEF AA +
Sbjct: 513 ASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAAEN 572
Query: 452 A 454
A
Sbjct: 573 A 573
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFA 430
AA + V L +++ + QL E FS+ GPV+ +V ++ + +G+ F++FA
Sbjct: 19 AATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVTNKGSDEHRGFAFVKFA 69
Score = 35.1 bits (77), Expect = 0.048
Identities = 20/66 (30%), Positives = 32/66 (48%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
S A+ +L + NL + ++ FS G V + + TGL KG+ F++F A
Sbjct: 326 SKAQKWKLIIRNLPFQAKPSDIKVVFSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDA 385
Query: 446 ADATNK 463
A+A K
Sbjct: 386 ANAIKK 391
>At5g04810.1 68418.m00503 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 952
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVV-FDRSTGLSKGYGFIEFASPSAAADATN 460
+++VGNL + + E+F QFGP+++ ++ + G+GFI +A+ +A A
Sbjct: 166 KIFVGNLPTWIKKPEFEEFFRQFGPIENVILIKGHHEVEKNAGFGFIIYAAEKSAMKAVE 225
Query: 461 KQIHTLEGFNLSVQL 505
G L+V+L
Sbjct: 226 FDGVEFHGRILTVKL 240
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 38.7 bits (86), Expect = 0.004
Identities = 27/70 (38%), Positives = 35/70 (50%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATN 460
+R+YVGNL V R+L + F FG V+S V GY F++F P A DA
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRAFGVVRSVWV-----ARRPPGYAFLDFEDPRDARDA-- 54
Query: 461 KQIHTLEGFN 490
I L+G N
Sbjct: 55 --IRALDGKN 62
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
L V N+ +LRE F +FGPV+ + D +G +G+ F+EF A +A
Sbjct: 49 LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEA 104
>At1g45100.1 68414.m05170 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Nicotiana tabacum] GI:7673355, [Cucumis
sativus] GI:7528270; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 497
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
L+V NL ++ + +F G V R++ + S G G+GF+EFAS + A A K
Sbjct: 249 LFVANLRDSIQISDIINFFKDVGEVVHVRLIVN-SQGKHAGWGFVEFASANEAEKALVKN 307
Query: 467 IHTLEGFNLSV 499
L + +S+
Sbjct: 308 GEYLHNYKISL 318
Score = 31.5 bits (68), Expect = 0.59
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +2
Query: 293 VGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
V NL+ ++ +F+ V S R+V + G GYGF+EFAS A A ++
Sbjct: 162 VSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHE-GKHVGYGFVEFASAYGANKALEEK 218
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
LYV L+ V R L ++F++ G V +V D T S+G+GFI S A
Sbjct: 47 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 106
Query: 467 IHT-LEGFNLSVQ 502
H+ L+G ++V+
Sbjct: 107 DHSVLQGRVITVE 119
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
LYV L+ V R L ++F++ G V +V D T S+G+GFI S A
Sbjct: 77 LYVTGLSHRVTERDLEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSL 136
Query: 467 IHT-LEGFNLSVQ 502
H+ L+G ++V+
Sbjct: 137 DHSVLQGRVITVE 149
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEF 427
L+V L + +++ F +GP++ +V D+ T KGY FIE+
Sbjct: 140 LFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYAFIEY 186
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
L+ NL++ + + +F + G V R +R G +G+G +EFAS A A
Sbjct: 299 LFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKA 354
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +2
Query: 329 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFA 430
LRE+FS G +++ V DR TG SKG ++EF+
Sbjct: 421 LREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS 454
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 37.9 bits (84), Expect = 0.007
Identities = 21/74 (28%), Positives = 38/74 (51%)
Frame = +2
Query: 245 SIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIE 424
++I V + R L+V NL + + ++F + G V +++ + G G GF+E
Sbjct: 115 NLISVKEAAVREKTLFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLK-GKLVGCGFVE 173
Query: 425 FASPSAAADATNKQ 466
FAS + A +A K+
Sbjct: 174 FASVNEAEEALQKK 187
Score = 35.9 bits (79), Expect = 0.027
Identities = 23/66 (34%), Positives = 34/66 (51%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
L+V NL+ + ++F+ G V S R++ + G GYGF+EFAS AD T K
Sbjct: 246 LFVANLSPQTKISDIFDFFNCVGEVVSIRLMVNHE-GKHVGYGFVEFAS----ADETKKA 300
Query: 467 IHTLEG 484
+ G
Sbjct: 301 LENKNG 306
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R L+V NL+ + ++F V R++ + G G GF+EFAS + A A
Sbjct: 487 RKKTLFVANLSPRTKISHIIKFFKDVAEVVRVRLIVNHR-GEHVGCGFVEFASVNEAQKA 545
Query: 455 TNK 463
K
Sbjct: 546 LQK 548
>At5g02530.1 68418.m00187 RNA and export factor-binding protein,
putative BcDNA.LD24793, Drosophila melanogaster,
EMBL:AF172637
Length = 292
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 442
+S +LY+ NL + V + ++E FS+ G ++ + +DRS G SKG + F+
Sbjct: 102 SSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRS-GRSKGTAEVVFSRRGD 160
Query: 443 AADATNKQIHT-LEGFNLSVQL 505
A A + + L+G + +++
Sbjct: 161 ALAAVKRYNNVQLDGKLMKIEI 182
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 37.5 bits (83), Expect = 0.009
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 442
+S+ +LYV L++ LR+ F QFG + +V D+ KG+ F+ + +
Sbjct: 71 SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEE 130
Query: 443 AADA 454
A A
Sbjct: 131 AMKA 134
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
A +YVGN+ + +++ +F G V ++ D+ G KG+ ++EF A +A
Sbjct: 88 ARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEAL 146
Query: 458 NKQIHTLEGFNLSV 499
L G L V
Sbjct: 147 QLNESELHGRQLKV 160
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
A +YVGN+ + +++ +F G V ++ D+ G KG+ ++EF A +A
Sbjct: 88 ARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEAL 146
Query: 458 NKQIHTLEGFNLSV 499
L G L V
Sbjct: 147 QLNESELHGRQLKV 160
>At5g65260.1 68418.m08209 polyadenylate-binding protein family
protein / PABP family protein low similarity to
poly(A)-binding protein II [Drosophila melanogaster]
GI:6007612; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain
Length = 220
Score = 36.7 bits (81), Expect = 0.016
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +2
Query: 278 AARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT 457
A ++VGN+ + +++++F G V ++ D+ G KG+ ++EF A +A
Sbjct: 91 ARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQEAL 149
Query: 458 NKQIHTLEGFNLSV 499
L G L V
Sbjct: 150 QLNESELHGRQLKV 163
>At5g59950.3 68418.m07518 RNA and export factor-binding protein,
putative
Length = 242
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 442
A +LY+ NL + V + ++E F++ G ++ V FDRS G SKG + ++
Sbjct: 80 AGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVYSRRGD 138
Query: 443 AADATNK 463
A A K
Sbjct: 139 ALAAVKK 145
>At5g59950.2 68418.m07519 RNA and export factor-binding protein,
putative
Length = 178
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 442
A +LY+ NL + V + ++E F++ G ++ V FDRS G SKG + ++
Sbjct: 16 AGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVYSRRGD 74
Query: 443 AADATNK 463
A A K
Sbjct: 75 ALAAVKK 81
>At5g59950.1 68418.m07517 RNA and export factor-binding protein,
putative
Length = 244
Score = 36.7 bits (81), Expect = 0.016
Identities = 21/67 (31%), Positives = 34/67 (50%)
Frame = +2
Query: 263 ASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSA 442
A +LY+ NL + V + ++E F++ G ++ V FDRS G SKG + ++
Sbjct: 82 AGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRS-GRSKGTAEVVYSRRGD 140
Query: 443 AADATNK 463
A A K
Sbjct: 141 ALAAVKK 147
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 36.7 bits (81), Expect = 0.016
Identities = 24/64 (37%), Positives = 30/64 (46%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
L+V L L FS+FG V SA V+ D TG S Y FIEF + + A K
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKM 304
Query: 467 IHTL 478
+ L
Sbjct: 305 DNAL 308
>At5g48650.1 68418.m06016 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
Length = 458
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +2
Query: 266 STARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAA 445
+ A +YV +L + L F QFG + + + GL YGF+EF AA
Sbjct: 314 AVAEGTSIYVRHLPFNANIDMLEAEFKQFGAITNGGIQVINQRGLGYPYGFVEFEEADAA 373
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 36.3 bits (80), Expect = 0.021
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +2
Query: 245 SIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIE 424
S ++ S + ++ L+V ++++ L + FSQ+G V V+ D+ KG+ ++
Sbjct: 9 SFTPLLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVT 68
Query: 425 FASPSAAADA 454
F+S A A
Sbjct: 69 FSSKEEAEKA 78
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
RLYVG L+ R L FS++G V R + + Y F+EF+ P A DA
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRV--------RDVDMKRDYAFVEFSDPRDADDA 60
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 35.5 bits (78), Expect = 0.036
Identities = 21/57 (36%), Positives = 27/57 (47%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
RLYVG L+ R L FS++G V R + + Y F+EF P A DA
Sbjct: 12 RLYVGRLSSRTRTRDLERLFSRYGRV--------RDVDMKRDYAFVEFGDPRDADDA 60
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 34.7 bits (76), Expect = 0.063
Identities = 17/71 (23%), Positives = 34/71 (47%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
+YVGN+ + +++++F G V ++ D+ G KG+ ++EF A ++
Sbjct: 105 IYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFVEVEAVQNSLILN 163
Query: 467 IHTLEGFNLSV 499
L G + V
Sbjct: 164 ESELHGRQIKV 174
>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
[Triticum aestivum] GI:1737492; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 101
Score = 34.7 bits (76), Expect = 0.063
Identities = 22/56 (39%), Positives = 28/56 (50%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
LY+ NL V L FS FG V + + D G S+G+ FIEF S +A A
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKD-FRGESRGFAFIEFESADSAGRA 73
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 34.7 bits (76), Expect = 0.063
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +2
Query: 281 ARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+R+YVGNL V R+L + F FG ++S V GY F++F A DA
Sbjct: 2 SRVYVGNLDPRVTERELEDEFRSFGVIRSVWV-----ARRPPGYAFLDFEDSRDARDA 54
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 34.7 bits (76), Expect = 0.063
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADAT-NK 463
+YVGNL + ++ + F ++GP+ + + GY F+EF P A DA +
Sbjct: 9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDL---KIPPRPPGYAFVEFEDPRDADDAIYGR 65
Query: 464 QIHTLEGFNLSVQL 505
+ +G L V++
Sbjct: 66 DGYDFDGCRLRVEI 79
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 34.3 bits (75), Expect = 0.083
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
+YVGN + H L FS+FG V + + GY F+ F A DA +
Sbjct: 4 VYVGNFDYDTRHSDLERLFSKFGRV--------KRVDMKSGYAFVYFEDERDAEDAIRRT 55
Query: 467 IHTLEGF 487
+T G+
Sbjct: 56 DNTTFGY 62
>At5g25060.1 68418.m02970 RNA recognition motif (RRM)-containing
protein KIAA0332 - Homo sapiens, EMBL:AB002330
Length = 946
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVF---DRSTGLSKGYGFIEF 427
+ LYVGNL+ V L F +FGP+ S ++++ D + GF+ F
Sbjct: 177 QTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSF 230
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 433
LYV L+ V + L +F++ G V S +V + T +S+G+ F+ +S
Sbjct: 74 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 122
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFAS 433
LYV L+ V + L +F++ G V S +V + T +S+G+ F+ +S
Sbjct: 73 LYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSS 121
>At3g48830.1 68416.m05333 polynucleotide adenylyltransferase family
protein / RNA recognition motif (RRM)-containing protein
similar to SP|P13685 Poly(A) polymerase (EC 2.7.7.19)
{Escherichia coli O157:H7}; contains Pfam profiles
PF01743: polyA polymerase family protein, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 881
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 335 EYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
++F+ G V S R++ + GYGF+EFASP A A K+
Sbjct: 700 DFFNDVGEVVSVRLIVSPESK-HVGYGFVEFASPCLANMALEKK 742
Score = 29.5 bits (63), Expect = 2.4
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 272 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 451
+R LYV L + ++F G V S ++ R+ GL GF+EFAS + A
Sbjct: 561 SRKKTLYVCCLPRDTKMPDIIDFFKDVGQVVSVQLTTKRN-GLRLSTGFVEFASANEAKK 619
Query: 452 A 454
A
Sbjct: 620 A 620
>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
protein
Length = 809
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
++VG+L L++ F G V R++ + T SKG F+ FA+ A A +
Sbjct: 216 IFVGSLDKGASEEDLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKE 274
Score = 33.1 bits (72), Expect = 0.19
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGP--VQSARVVFD-RSTGLSKGYGFIEFASPSAAADAT 457
L+VGN+ LRE +G + +V D + +++GY F+EF+S S A DA
Sbjct: 296 LFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSRSDAMDAH 355
Query: 458 NKQI 469
+ +
Sbjct: 356 KRLV 359
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R+YVGNL V R+L + F FG +++ V GY F+EF A DA
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDA 54
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
R+YVGNL V R+L + F FG +++ V GY F+EF A DA
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFGVLRNVWV-----ARRPPGYAFLEFDDERDALDA 54
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 31.9 bits (69), Expect = 0.45
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 260 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPS 439
M+ T+ +Y+GN+ V R L + Q G V + D+ T KG+ F E+ +
Sbjct: 1 MSGTSNCT-VYIGNVDERVSDRVLYDIMIQAGRVIDLHIPRDKETDKPKGFAFAEYETEE 59
Query: 440 AA 445
A
Sbjct: 60 IA 61
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 31.5 bits (68), Expect = 0.59
Identities = 20/65 (30%), Positives = 32/65 (49%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
RL+V NL V + +RE FS+ G V+ + +D++ G G + + S A A K
Sbjct: 94 RLHVTNLDQGVTNEDIRELFSEIGEVERYAIHYDKN-GRPSGTAEVVYPRRSDAFQALKK 152
Query: 464 QIHTL 478
+ L
Sbjct: 153 YNNVL 157
>At1g79100.1 68414.m09223 arginine/serine-rich protein-related
similar to arginine/serine-rich protein [Arabidopsis
thaliana] GI:6601502
Length = 70
Score = 31.5 bits (68), Expect = 0.59
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 326 QLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGF 487
++R + FG + ++ DR+ LS+G ++EF + ADA Q++ G+
Sbjct: 3 KIRVFRGDFGEIIHVQLAIDRAANLSRGDAYVEF--KAKIADAEKPQLYMDGGY 54
>At5g23590.1 68418.m02768 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|P39101
CAJ1 protein Saccharomyces cerevisiae; contains Pfam
profile PF00226 DnaJ domain
Length = 296
Score = 31.1 bits (67), Expect = 0.78
Identities = 29/79 (36%), Positives = 35/79 (44%)
Frame = +2
Query: 326 QLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFNLSVQL 505
+LRE FS+FG V+ V RST K I A+ A AT L L V L
Sbjct: 190 RLREVFSEFGEVED---VVIRST-KKKCSALIVMATKDGAVAATRTLCGNLSNPLLVVPL 245
Query: 506 QIIRYSEF*LVFKMAEALP 562
Q ++F K AEA P
Sbjct: 246 QKAAQTDFLTAKKSAEAEP 264
>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
from [Homo sapiens], RNA-binding protein Y14 [Xenopus
laevis] GI:11034807; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 202
Score = 31.1 bits (67), Expect = 0.78
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 341 FSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
F FG +++ + DR +G KGY IE+ A A
Sbjct: 115 FGDFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSA 152
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 30.7 bits (66), Expect = 1.0
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Frame = +2
Query: 275 RAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRS---TGLSKGYGFIEFASPSAA 445
+ LYV NL+ V L F +FGP+ S ++++ R+ + GF+ F + A
Sbjct: 185 QTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFVAFMN-RAD 243
Query: 446 ADATNKQIHTLEGFNLSVQLQIIRYSEF*LVFKMAEALPXYPDSDFSDEDQSPLDSLFN 622
+A +++ + + ++ I + + +VF ++ALP P + + + +F+
Sbjct: 244 GEAAKEKMQGIIVYEYELK---IGWGK--VVFLPSQALPAPPPGHMAIRSKEGCNLIFS 297
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 341 FSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFNLSVQ 502
F QFGP++ R+ + Y F+EF AA A ++G V+
Sbjct: 570 FKQFGPIKKGRIRVINPANSNYWYAFVEFEEADAAKRAIQASPLNVDGHTTYVE 623
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = +2
Query: 272 ARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAAD 451
A A + V NL + F QFG ++ V S YGF+EF +AA
Sbjct: 1073 ANNAAICVKNLPLNATIALVENAFKQFGEIRRGGVEVRNKRSFS--YGFVEFKEENAAQR 1130
Query: 452 ATNKQIHTLE 481
A T++
Sbjct: 1131 AIKASPVTID 1140
>At2g14160.1 68415.m01577 RNA recognition motif (RRM)-containing
protein
Length = 90
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = +2
Query: 260 MASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVF 382
MAST YVGNL L+ FSQFG V + V F
Sbjct: 1 MASTNVEFTCYVGNLESDTEENDLKNAFSQFGDVIHSNVRF 41
>At5g60980.1 68418.m07649 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 459
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+YV NL + QL E F FG ++ + RS +GF+EF + S A
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQV-RSNKQGFCFGFVEFETSSGKQSA 349
>At3g63450.1 68416.m07144 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 399
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 335 EYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 436
+YFS FGPVQ R+ + + + +GF+ F P
Sbjct: 174 DYFSTFGPVQDVRIPYQQ----KRMFGFVTFMYP 203
>At5g66010.1 68418.m08312 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative similar to Heterogeneous
nuclear ribonucleoprotein SP|P55795, SP|P31943,
SP|P52597 {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM) domain
Length = 289
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNK 463
L + L ++V Q+ E+FS + +Q V R G + G F+EF + A A K
Sbjct: 202 LKMRGLPYSVNKPQIIEFFSGYKVIQGRVQVVCRPDGKATGEAFVEFETGEEARRAMAK 260
>At5g60980.2 68418.m07650 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
G3BP ras-GTPase-activating protein SH3-domain binding
protein, Mus musculus, EMBL:MMU65313
Length = 460
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+YV NL + QL E F FG ++ + + +GF+EF + S A
Sbjct: 295 IYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFCFGFVEFETSSGKQSA 350
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 338 YFSQFGPVQSARVVFDRSTGLSKGYGFIEFASP 436
YFS FGPVQ R+ + + + +GF+ F P
Sbjct: 278 YFSTFGPVQDVRIPYQQ----KRMFGFVTFVYP 306
>At5g61960.1 68418.m07777 RNA recognition motif (RRM)-containing
protein Mei2-like protein, Arabidopsis thaliana,
EMBL:D86122
Length = 915
Score = 29.5 bits (63), Expect = 2.4
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +2
Query: 242 NSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFI 421
NS+ ++ + L VGN++ V +L+ F QFG +Q+ ++G+ +
Sbjct: 204 NSVGELNRGEIPSRTLLVGNISSNVEDYELKVLFEQFGDIQALHTACK-----NRGFIMV 258
Query: 422 EFASPSAAADATNK-QIHTLEGFNLSVQLQI 511
+ AA +A Q L G L ++ I
Sbjct: 259 SYCDIRAAQNAARALQNKLLRGTKLDIRYSI 289
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 29.5 bits (63), Expect = 2.4
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQ 466
L+VGNL + R+L + F +FG ++S RS Y F+ F A A
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESLAFQPGRS------YAFVNFNHDEDAFAA---- 74
Query: 467 IHTLEGFNLS 496
I +L+GF LS
Sbjct: 75 IESLQGFPLS 84
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = +2
Query: 329 LREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFNLSV 499
L +YFS FG + V TG S GY +I+ A A H + G++L V
Sbjct: 254 LSKYFSSFGEITRVFVPPSHGTGGSLGYAYIDL--KEGAEKALELGRHDVGGWDLVV 308
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 323 RQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
+ LR+ F+ F AR++ D+ T KG+GFI F S A A
Sbjct: 85 QSLRQLFAPF-----ARLIKDQQTQRPKGFGFITFESEDDAQKA 123
>At3g48840.1 68416.m05334 RNA recognition motif (RRM)-containing
protein
Length = 144
Score = 29.1 bits (62), Expect = 3.1
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Frame = +2
Query: 338 YFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADATNKQIHTLEGFNLSVQLQIIR 517
+F G V S R++ D G G GF+EFAS A A ++ + N V L +
Sbjct: 14 FFRDVGEVVSVRLIVDHR-GKHVGCGFVEFASAYKAKKAPLEKKNLRRLRNRYVVLDVAE 72
Query: 518 YSEF*L--VFKMAEALPXYPDSDFSDEDQSPLDSLFNK 625
+ + L + +AE L Y D + D L NK
Sbjct: 73 IAPYPLRPKYNLAEKL-WYEDYLREESLLIEADDLENK 109
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGY 412
L+VG + V L E FS+FG ++ R + +R T Y
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIEDFRFLRERKTAFIDYY 293
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA-TNK 463
+YVGNL + ++ + F ++G + + + Y F+EF A DA +
Sbjct: 9 IYVGNLPGDIREHEIEDIFYKYGRIVDIEL---KVPPRPPCYCFVEFEHSRDAEDAIKGR 65
Query: 464 QIHTLEGFNLSVQL 505
+ L+G L V+L
Sbjct: 66 DGYNLDGCRLRVEL 79
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 287 LYVGNLAWTVGHRQLREYFSQFGPVQSARV 376
++VGNL V + + + FS+FG V+S R+
Sbjct: 173 VFVGNLPLKVKKKVILKEFSKFGEVESVRI 202
>At2g33440.1 68415.m04099 splicing factor family protein similar to
Splicing factor U2AF 65 kDa subunit (U2 snRNP auxiliary
factor large subunit) {Homo sapiens} SP|P26368, {Mus
musculus} SP|P26369; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 247
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 284 RLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGYGFIEFASPSAAADA 454
++++G + + L E S FGP+++ R F + L++ F+E+ S A
Sbjct: 41 KIFIGGFSKAISSEMLMEIVSVFGPLKAYR--FVSNNDLNQRCAFLEYTDGSVTLKA 95
>At3g10845.1 68416.m01306 RNA recognition motif (RRM)-containing
protein similar to SP|P42731 Polyadenylate-binding
protein 2 (Poly(A) binding protein 2) (PABP 2)
{Arabidopsis thaliana}; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 423
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +2
Query: 233 PVGNSIIKVMASTARAARLYVGNLAWTVGHRQLREYFSQFGPVQSARVVFDRSTGLSKGY 412
PVG + ++ +++ L N + GH+ + P + + TG G
Sbjct: 166 PVGCAFVEFLSANEAKKVLENKNGEYFHGHKIILMRGHGETPDFAEHRLIVNHTGKHVGK 225
Query: 413 GFIEFASPSAAADATNKQ 466
GF+EFAS A +A K+
Sbjct: 226 GFVEFASAKEAENALEKK 243
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,156,061
Number of Sequences: 28952
Number of extensions: 264478
Number of successful extensions: 950
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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