Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0063
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 36 0.007
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 29 1.0
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 28 1.8
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 27 3.1
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 27 3.1
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po... 27 3.1
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 4.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 5.4
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 26 5.4
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 7.1
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 25 9.4
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 533 ELIKYILADDSQHTGLVINERILNIPAAISVPLFASLQTELEKAHRE 673
EL K + + GL++NER++N+P + P++ L E++ A E
Sbjct: 168 ELQKLLEPNSGSQVGLIVNERLINMPVQVIPPMYNMLLEEMQWAINE 214
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 28.7 bits (61), Expect = 1.0
Identities = 11/45 (24%), Positives = 26/45 (57%)
Frame = +1
Query: 115 TQTAKATKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 249
+ + + +E+++ SE+DS+ + E E +++ E + E+SD
Sbjct: 83 SDSESSEEEEETESEEDSEVSDESESESESESESEEESESEEESD 127
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 603 TFLQRLAYHYLHHYRLNLRKLIGKNMLYNFK 695
TF L +H + Y L + +L+G M Y F+
Sbjct: 396 TFYDELHHHRVSGYSLKMIRLVGLEMAYRFR 426
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 467 QCGTDQRIAYKTISENADPRTKELIKYILADDSQHTGLVIN 589
Q GT+ +A K ++ N P+ + ++ IL S H ++N
Sbjct: 405 QVGTNLSVAIKKMNINQQPKKEFIVNEILVMKSHHHKNIVN 445
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 232 YVLRNQPVALFHRHSCRLNQNQNLFR 155
Y+LR+ P + F+R+S + N N FR
Sbjct: 18 YILRHLPFSNFNRYSTASHDNVNAFR 43
>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 124 AKATKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 249
A +E++ E + +FD +G E+E + D +G D D
Sbjct: 174 ADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDGD 215
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 91 LIKRTRKLTQTAKATKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSDFQVLSSY 270
L++R RK+ K EQ S E D D + ++ +++D +NP++ SS+
Sbjct: 119 LLQRFRKVRIAEKKDSEQPSSHEIHLTDDDDKTTLQKQMVESDQLKKNPQEVKLAPPSSF 178
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = +1
Query: 100 RTRKLTQTAKATKEQDS---GSEKDSDFDSDG-NYVGEKELQADFEGRNPEDSDFQ 255
+T T T A + S GSE DSD DSD + V +LQ + RN + Q
Sbjct: 421 QTLVTTSTISAAGNEPSDEIGSENDSDSDSDSDSSVPLSQLQKKSQQRNSVSHEIQ 476
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 496 VSNSLICATLGSFFLL-VIFTTVVTPKT 416
+S+S IC+ +G FF L + +++P+T
Sbjct: 324 ISDSTICSLIGGFFFLRFVNPAIISPQT 351
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = -1
Query: 182 SESKSESFSLPESCSFVAFAVCVNFLVLFIRHFSKINKRGGY*RNIIQVENEMRLI 15
+E+K S CS+ F F F+R+ ++I+K ++IQ E I
Sbjct: 2 AENKKFSIRKKRECSYPTFRTLYEFNKFFLRYKTEISKIQRRTSSLIQYEEHSSAI 57
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -2
Query: 310 PPRSTFDFRNSCLSSCLIPGSHYLLGYVLRNQP 212
P S R +++C + +Y L Y+L++QP
Sbjct: 47 PEISKHGLRKKIVNACQLRARNYPLQYILKSQP 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,790,461
Number of Sequences: 5004
Number of extensions: 50510
Number of successful extensions: 195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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