Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0063
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713     30   1.8  
10_01_0209 + 2236530-2237301,2239196-2239297,2239535-2239716,224...    29   4.2  
05_02_0135 - 6965294-6965875                                           29   5.6  
01_04_0068 + 15693131-15693533,15693604-15693803,15693879-156941...    29   5.6  
05_01_0318 - 2488529-2489196,2489773-2490372,2490620-2490773,249...    28   9.8  
03_06_0724 - 35757228-35757323,35757837-35757893,35757983-357580...    28   9.8  

>04_04_0877 + 29018168-29018279,29019013-29019230,29019333-29019713
          Length = 236

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 109 KLTQTAKATKEQDSGSEKDSDFDSDGN 189
           K+ +  K+ KE+D G   D D+DS+GN
Sbjct: 86  KVLRLLKSLKERDGGVYLDEDYDSEGN 112


>10_01_0209 +
           2236530-2237301,2239196-2239297,2239535-2239716,
           2240210-2240420,2240526-2240766,2240861-2241011,
           2241116-2241424
          Length = 655

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 187 NYVGEKELQADFEGRNPEDSDFQ 255
           N  GE+EL  D EG+NPE S F+
Sbjct: 303 NLQGEEELVWDLEGKNPEFSVFE 325


>05_02_0135 - 6965294-6965875
          Length = 193

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 139 EQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPEDSD 249
           + DS S+ DSDFD   +   + +   D +G + +D D
Sbjct: 122 DHDSDSDHDSDFDRGSDSDHDSDSNHDIDGDDNDDDD 158


>01_04_0068 +
           15693131-15693533,15693604-15693803,15693879-15694162,
           15694251-15694428
          Length = 354

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 115 TQTAKATKEQDSGSEKDSDFDSDGNYVGEKELQADFEGRNPE 240
           T T  A   QD  S   +     GN  GE+E++   + R+PE
Sbjct: 106 TSTVSACTSQDKVSPSSTACPHKGNEEGEREVKRQLKPRSPE 147


>05_01_0318 -
           2488529-2489196,2489773-2490372,2490620-2490773,
           2490996-2491085,2491926-2492061,2492159-2492418,
           2493448-2493846,2494482-2494661,2494728-2494922,
           2496614-2496678,2497186-2497321,2497442-2497483,
           2498351-2498689
          Length = 1087

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 707 WDQ*NFTLLEESQKCLLPIRKRKSFS 784
           W+Q   + LEE +K    IRKRK FS
Sbjct: 266 WEQQRISRLEEEEKNQAEIRKRKFFS 291


>03_06_0724 -
           35757228-35757323,35757837-35757893,35757983-35758075,
           35758271-35758336,35758444-35758653,35758750-35759022,
           35759112-35759251,35759330-35759471
          Length = 358

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 255 GIKQLLRQLFLKSNVDLGGLAQIIISQNYIGSVVK 359
           G+K LL+        DL G   +I+ Q  +G+VVK
Sbjct: 114 GVKLLLKTYLDSKPWDLTGFVDLILEQTTVGTVVK 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,710,762
Number of Sequences: 37544
Number of extensions: 286610
Number of successful extensions: 924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)