Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0061
         (748 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P40987 Cluster: Chromosome instability protein 1; n=2; ...    38   0.35 
UniRef50_Q1ITX9 Cluster: Sensor protein; n=1; Acidobacteria bact...    34   4.3  
UniRef50_Q76IK4 Cluster: Pol-like protein; n=1; Ciona intestinal...    34   4.3  
UniRef50_Q7RDV9 Cluster: Putative uncharacterized protein PY0531...    33   7.5  
UniRef50_Q4Q9U2 Cluster: Putative uncharacterized protein; n=3; ...    33   7.5  

>UniRef50_P40987 Cluster: Chromosome instability protein 1; n=2;
           Saccharomyces cerevisiae|Rep: Chromosome instability
           protein 1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 1014

 Score = 37.5 bits (83), Expect = 0.35
 Identities = 24/62 (38%), Positives = 33/62 (53%)
 Frame = +1

Query: 454 WCNRNKKGVIKRQPVAYRNHLNKKLTIFVSLFHIKYPLCIFNINNNKPTIYFFNKTFAQN 633
           + N +   VI   P A+++  NK  T+ VS     YP+CI  IN  K  +YF N T A +
Sbjct: 115 YLNLSWLSVILLSPYAFKDKFNK--TLQVSSRFENYPICIPPINKIKAVLYFKNFTDAFD 172

Query: 634 QL 639
           QL
Sbjct: 173 QL 174


>UniRef50_Q1ITX9 Cluster: Sensor protein; n=1; Acidobacteria
           bacterium Ellin345|Rep: Sensor protein - Acidobacteria
           bacterium (strain Ellin345)
          Length = 831

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 22/53 (41%), Positives = 29/53 (54%)
 Frame = -1

Query: 526 VSYLNDYDKLRADV*LRLSCYDYTIAICCPGNEAEKLQIRTKKGTIDNAVTDM 368
           V  + D   LRA V   L    Y++A  C G++A  L+I  K GTID  VTD+
Sbjct: 710 VLVVEDEPDLRAAVVESLRTLGYSVAHACNGHQA--LEIAEKLGTIDVLVTDV 760


>UniRef50_Q76IK4 Cluster: Pol-like protein; n=1; Ciona
            intestinalis|Rep: Pol-like protein - Ciona intestinalis
            (Transparent sea squirt)
          Length = 1263

 Score = 33.9 bits (74), Expect = 4.3
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
 Frame = +1

Query: 376  SRRCQLFLFWYEFEVFQ----LHYPDNRWRWCN--RNKKGVIKRQPVAYRNHLNKKLTIF 537
            +++  L  FW   E+++      +P ++   C    NKK + KR+P+AY N +   + ++
Sbjct: 933  TKQTPLSTFWSSIELWRECVSQFWPQDKVYNCAIWLNKKVLFKRKPIAYENFIKSGILMY 992

Query: 538  VSLFHIKYPLCIFNINNNKPTIYFFNKTFAQNQ 636
              +       C F I   K T+   N+  A  Q
Sbjct: 993  QQIIDNNSDYCSFTILCEKYTLTNNNQNHADYQ 1025


>UniRef50_Q7RDV9 Cluster: Putative uncharacterized protein PY05311;
            n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY05311 - Plasmodium yoelii yoelii
          Length = 1263

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +1

Query: 463  RNKKGVIKRQPVAYRN-----HLNK-KLTIFVSLFHIKYPLCIFNINNNKPTIYFFN 615
            RNKKG++K   + Y N       NK K+ +  ++  I      FN NNNK T+Y+ +
Sbjct: 1177 RNKKGIVKLYKITYENVKIIPSKNKYKMHVTRNMNVILQKEVTFNSNNNKRTLYYID 1233


>UniRef50_Q4Q9U2 Cluster: Putative uncharacterized protein; n=3;
           Leishmania|Rep: Putative uncharacterized protein -
           Leishmania major
          Length = 1256

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 11/25 (44%), Positives = 21/25 (84%)
 Frame = -2

Query: 198 SASAYFIRTNAIYNNICFYIYVSDA 124
           SAS  +++T+ +YN++CF++YV+ A
Sbjct: 873 SASVEWLQTDVLYNDMCFFLYVNKA 897


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,724,553
Number of Sequences: 1657284
Number of extensions: 10797484
Number of successful extensions: 23158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23148
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)