Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0061
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   6.6  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   8.7  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   8.7  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    25   8.7  

>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 344 SDVNTN*SHISHGVVNCSFFGTNLKFFSFITRTTD 448
           S +NT+  H +  + N   FGT+L +++  ++ +D
Sbjct: 163 SSLNTSSHHRTSSISNSKSFGTSLSYYNRSSKPSD 197


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 572 FLISIITSRPFIFLTKLLLKISYLTSV*KIMNF*LILM*Y*STY 703
           F IS++       +T LLLK SYL     I +  ++LM Y S +
Sbjct: 237 FFISLLIGVSIGLITALLLKYSYLRRYPSIESCIILLMAYTSYF 280


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -2

Query: 489 TFD-YAFLVTITPSPSVVRVMKLKNFKFVP 403
           T+D + FL TITPSPS    +   N  F+P
Sbjct: 429 TYDSHTFLTTITPSPS--NSISYTNNTFIP 456


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 247 HLNYDVTLIVVRGIRHERKRLLHTDE 170
           +LNY   L++  G+  E+K L H  E
Sbjct: 148 YLNYMYKLLIEAGVEFEKKELSHIKE 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,867
Number of Sequences: 5004
Number of extensions: 49808
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)