Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0059
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.84 
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    27   3.4  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    27   3.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   5.9  

>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 541 PQYHHVSNRVLRNCREMPDCTES 609
           P+ HH+ N V+R    MPD T S
Sbjct: 280 PEQHHLINNVVRLVSRMPDATNS 302


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 653 KKPSPACDGESQTSPLSVQSGISRQFRNTRFETWWY 546
           K P+P   GE +T+PLS  S I R+ R  RF++  Y
Sbjct: 22  KAPTPEY-GEVETAPLSQSSWIYRRPRIGRFKSLAY 56


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 405 LHMASPCSLISQTRPCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFSS 250
           LH++   S  +Q   C ++  QAR+ H D     + ++DL   +V    F S
Sbjct: 229 LHLSLVRSFATQLLSCTSLLKQARIIHCDLKPENILLQDLSSPIVKVIDFGS 280


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 641  PACDGESQTSPLSVQSGISRQFRNTRFETWWYCGP 537
            P C+ ES     S+    SR+ +      WW  GP
Sbjct: 1627 PLCNFESDDIQYSIDVVYSRKLKEHNIILWWNKGP 1661


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,562
Number of Sequences: 5004
Number of extensions: 48951
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)