Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0059
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    66   3e-11
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    66   3e-11
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    43   2e-04
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    43   2e-04
U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    29   4.2  
AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical ...    28   7.3  
Z81135-1|CAB03453.1|  627|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AY438643-1|AAR00670.1|  627|Caenorhabditis elegans abnormal DAue...    27   9.6  
AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical...    27   9.6  

>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +2

Query: 362 GRVCEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRCYASTTLISAV 538
           G+ C + + G+  C CI  CP  + D    VC N N+T+ S C++YR+RC          
Sbjct: 61  GKECVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLYRERCLCKRKSKECS 120

Query: 539 VRNTTTFQIEYYGTAEKCLTALKAEMSDFPRRMXDLAF 652
                   +EY G  +K     +  M+ FP RM D  F
Sbjct: 121 KAFNAKVHLEYLGECKKLDECTEEHMAQFPERMADWLF 158


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
 Frame = +2

Query: 362 GRVCEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRCYASTTLISAV 538
           G+ C + + G+  C CI  CP  + D    VC N N+T+ S C++YR+RC          
Sbjct: 61  GKECVVGKKGEPTCECISKCPELDGDPMDKVCANNNQTFTSLCDLYRERCLCKRKSKECS 120

Query: 539 VRNTTTFQIEYYGTAEKCLTALKAEMSDFPRRMXDLAF 652
                   +EY G  +K     +  M+ FP RM D  F
Sbjct: 121 KAFNAKVHLEYLGECKKLDECTEEHMAQFPERMADWLF 158


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 371 CEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRCYASTTLISA 535
           C + E+  A C C  DCP YE +  + VC     T+ S+C + +  C+ S  +++A
Sbjct: 524 CVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTA 579



 Score = 31.5 bits (68), Expect = 0.59
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +2

Query: 371 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRCYASTTLISAVVRNT 550
           C +     A C C   C    D  R VC    ET+ ++CE+ ++ C   + +    V++ 
Sbjct: 381 CVVKPDRTAECECPNRCE---DVMRPVCATNGETFDNECEMKKKSCETKSMI---KVKHQ 434

Query: 551 TTFQIEYYGTAEKC 592
            T  I    T + C
Sbjct: 435 GTCGIGVCATFDSC 448



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = +2

Query: 362 GRVCEINEHGD---AMCNCIKDCPYETDSRRM--VCTNFNETWQSDCEVYRQRCYASTTL 526
           G  C +N+      A C C   CP   DS     VC++    +QS C +    C + T +
Sbjct: 226 GEDCVVNQINGILLAKCVCPTQCPNYGDSVESSPVCSSHGVDYQSSCHLRHHACESKTNI 285



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 392 DAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRCYASTTL 526
           D    C+  CP  TD  + VC +  +T+ ++C +    C A   +
Sbjct: 458 DGKPKCV--CPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNI 500


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 371 CEINEHGDAMCNCIKDCP-YETDSRRMVCTNFNETWQSDCEVYRQRCYASTTLISA 535
           C + E+  A C C  DCP YE +  + VC     T+ S+C + +  C+ S  +++A
Sbjct: 532 CVVGENEKAECKCPDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTA 587



 Score = 31.5 bits (68), Expect = 0.59
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +2

Query: 371 CEINEHGDAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRCYASTTLISAVVRNT 550
           C +     A C C   C    D  R VC    ET+ ++CE+ ++ C   + +    V++ 
Sbjct: 389 CVVKPDRTAECECPNRCE---DVMRPVCATNGETFDNECEMKKKSCETKSMI---KVKHQ 442

Query: 551 TTFQIEYYGTAEKC 592
            T  I    T + C
Sbjct: 443 GTCGIGVCATFDSC 456



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = +2

Query: 362 GRVCEINEHGD---AMCNCIKDCPYETDSRRM--VCTNFNETWQSDCEVYRQRCYASTTL 526
           G  C +N+      A C C   CP   DS     VC++    +QS C +    C + T +
Sbjct: 234 GEDCVVNQINGILLAKCVCPTQCPNYGDSVESSPVCSSHGVDYQSSCHLRHHACESKTNI 293



 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 392 DAMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRCYASTTL 526
           D    C+  CP  TD  + VC +  +T+ ++C +    C A   +
Sbjct: 466 DGKPKCV--CPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNI 508


>U00052-3|AAK21426.1|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.4 protein.
          Length = 308

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 460 LQRNLAIGLRSIPPA--MLCLDNSDQCRGPQYHHVSNRVLRNCREMPDC 600
           L   LA+G  + PP+  +  L +S         H   R+L +CR +PDC
Sbjct: 4   LSAPLAVGFSAWPPSPPLPPLAHSPLQDAVHADHNHRRILNSCRNLPDC 52


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/62 (32%), Positives = 28/62 (45%)
 Frame = +2

Query: 488  EVYRQRCYASTTLISAVVRNTTTFQIEYYGTAEKCLTALKAEMSDFPRRMXDLAFLTSCA 667
            EV +Q     TTL +  VR+  T     Y T   C+T L   + +   R  +L+ L SC 
Sbjct: 1186 EVEQQPSLFLTTLSNLKVRDAFTT----YSTINTCVTQLATSVENLRERGCNLSMLRSCV 1241

Query: 668  DI 673
             I
Sbjct: 1242 AI 1243


>AC024751-7|AAK21507.2| 1258|Caenorhabditis elegans Hypothetical
            protein Y18H1A.3 protein.
          Length = 1258

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 366  VSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAM 512
            VS K  + ++PC   SRTV  R   D    +   KP   +  +   +A+
Sbjct: 883  VSRKDFHAKSPCEITSRTVVGRHIWDLDTHEDVRKPATNVTNWLRKEAL 931


>Z81135-1|CAB03453.1|  627|Caenorhabditis elegans Hypothetical
           protein W01G7.1 protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -2

Query: 342 QARVFHVDFFVFI---LFIRDLVEKVVNSGYFSSWYRFSSKLSDIPCSMC 202
           +  V HV+F  +    L   DL E V+ SG    WY+    +  I C  C
Sbjct: 187 RVHVVHVNFIDYCSEWLESDDLEEDVMQSGTHGYWYKNRRNMRCIECQHC 236


>AY438643-1|AAR00670.1|  627|Caenorhabditis elegans abnormal DAuer
           Formation DAF-5,a Ski oncogene homolog involved in a
           neuronal TGF betapathway (71.0 kD) (daf-5) protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = -2

Query: 342 QARVFHVDFFVFI---LFIRDLVEKVVNSGYFSSWYRFSSKLSDIPCSMC 202
           +  V HV+F  +    L   DL E V+ SG    WY+    +  I C  C
Sbjct: 187 RVHVVHVNFIDYCSEWLESDDLEEDVMQSGTHGYWYKNRRNMRCIECQHC 236


>AF022985-13|AAB69968.1|  375|Caenorhabditis elegans Hypothetical
           protein T15B7.15 protein.
          Length = 375

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 164 SEQLGRGDISEAEHIEHGMSESLDEKRYHEEK*PELTTFSTRSLMKRMKTKKST 325
           SE   +  + +   IE+ ++  LDE   + +K  ++T+     L++  +T+K+T
Sbjct: 267 SENKRKTTLEKYIQIENELNSKLDEALQNSDKCQKMTSLLEDQLLREQQTRKAT 320


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,258,052
Number of Sequences: 27780
Number of extensions: 304221
Number of successful extensions: 1094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)