Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0059
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00905.1 68417.m00123 expressed protein                             29   2.9  
At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical...    28   6.8  

>At4g00905.1 68417.m00123 expressed protein
          Length = 263

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 332 TLA*KSTAAQGRVCEINEHGDAMCNCIKDCPYE 430
           TLA  S+++   V E+N+  +A C    DC Y+
Sbjct: 53  TLASSSSSSSSSVSEVNDSSEAPCPTYPDCGYK 85


>At3g55270.1 68416.m06138 MAP kinase phosphatase (MKP1) identical to
           MAP kinase phosphatase (MKP1) GI:13540262 from
           [Arabidopsis thaliana]
          Length = 534

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/72 (31%), Positives = 35/72 (48%)
 Frame = +3

Query: 369 SAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAMPRQL*SVPWSAI 548
           S   ++T +   TAS   P   +PD+ C   ST  GN +  ++ S        S+P S  
Sbjct: 240 SGSPSSTTSSSSTAS---PPFLSPDSVC---STNSGNSLKSFSQSSGRSSLRPSIPPSLT 293

Query: 549 PPRFKSSITELP 584
            P+F SS++ LP
Sbjct: 294 LPKF-SSLSLLP 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,325
Number of Sequences: 28952
Number of extensions: 279032
Number of successful extensions: 836
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)