Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0058
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843 34 0.11
06_03_1332 - 29403320-29407804 29 3.1
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 29 5.4
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 29 5.4
11_06_0232 + 21559467-21559532,21559586-21560200 29 5.4
07_01_0105 - 798883-798942,799118-799186,799282-799345,799434-79... 29 5.4
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 29 5.4
>03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843
Length = 588
Score = 34.3 bits (75), Expect = 0.11
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -3
Query: 586 AHVVLGSGFVFN*QTSNTDYAECSQSEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIVV 407
+H VLG F + + DYA+ + +P W + L++ V +AIV+
Sbjct: 221 SHYVLGWSFSLSGIAQDLDYAKLPSLPPVMATAASTKHMPVKIWLPVSLSVTV-VAAIVM 279
Query: 406 AVIAQRQSKT--VALVHQLNVVFGENK 332
++ +RQ + V LV V FG ++
Sbjct: 280 FLLFRRQRRAIYVELVEDWEVEFGPHR 306
>06_03_1332 - 29403320-29407804
Length = 1494
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/74 (29%), Positives = 31/74 (41%)
Frame = -3
Query: 664 VRCPYLAGLPXSNWXLKPFRRC*PP*AHVVLGSGFVFN*QTSNTDYAECSQSEVDLVVLP 485
V CP L+ P W P R ++ G G F DY++ Q E+ ++V
Sbjct: 1016 VNCPKLSSFPPIPWRGSPCRA-------LIEGVGLDFQ----QLDYSKNKQYELCMLVKG 1064
Query: 484 QRNELPADFWTRLV 443
+ L FW RLV
Sbjct: 1065 KDEHLDGAFWRRLV 1078
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 85 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*THGV 264
PT+ SPT +S + A+S ++ + K R RR+ S T +Y + T+ +
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPS---TKNYSSADETNAL 63
Query: 265 -RLPALDARLQGYR 303
R LD + G++
Sbjct: 64 QRKRKLDEKRTGFQ 77
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 85 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*THGV 264
PT+ SPT +S + A+S ++ + K R RR+ S T +Y + T+ +
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPS---TKNYSSADETNAL 63
Query: 265 -RLPALDARLQGYR 303
R LD + G++
Sbjct: 64 QRKRKLDEKRTGFQ 77
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +1
Query: 100 SPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYET 243
+P P ++T ASS P T P + +R R RRA+++Q +S T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186
>07_01_0105 -
798883-798942,799118-799186,799282-799345,799434-799516,
799957-800022,800143-800233,800622-800779,801144-801338,
801499-801628,803016-803168,803877-803962
Length = 384
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 570 PKTTWAYGGQQRRKGFKXQLXLGXPAKYGQRTFCFFMYXPRNYNEGVXAL*GQTETW 740
PK W Y + G + + L YG +C F RN + + GQT +W
Sbjct: 15 PKEYWDYEALTVQWGVQQYITLSSVC-YGTSVYCLFFIFLRNDRKIMFCKSGQTRSW 70
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = +1
Query: 85 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*THGV 264
PT+ SPT +S + A+S ++ + K R RR+ S T +Y + T+ +
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPS---TKNYSSADETNAL 63
Query: 265 -RLPALDARLQGYR 303
R LD + G++
Sbjct: 64 QRKRKLDEKRTGFQ 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,064,816
Number of Sequences: 37544
Number of extensions: 369160
Number of successful extensions: 1081
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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